Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 197 a.a., RNA polymerase from Azospirillum brasilense Sp245

 Score =  100 bits (249), Expect = 3e-26
 Identities = 66/166 (39%), Positives = 93/166 (56%), Gaps = 4/166 (2%)

Query: 1   MLTSPMSGLLASFQEHYDDLLQFLTRRMSDRQRAADVAQETYLKLVNIDEQAVPVLHARS 60
           M+ +    L A F  H   L++ L+R +     A D+AQE YLK V   E+  PV +   
Sbjct: 1   MVDAAKPTLDAVFIGHRGALVRLLSRMVGSAATAEDLAQEAYLK-VRAAERDRPVEYPAP 59

Query: 61  FIFRVAGNLAIDALRREQR---IAASHDDSDGACEVACPAPAPEAALLARERLQILDQAL 117
           F+F+ A NLA+D LRRE+R   +      ++G   VA P P+PE     R+RL  ++ AL
Sbjct: 60  FLFQTARNLALDHLRRERRNAVVVTQDITAEGMEAVAAPLPSPETEAGDRQRLARMETAL 119

Query: 118 LQLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAKYIGQALRHC 163
             L +  R+ LLLNR+EGL+  Q+A+RL VS S V K +  AL  C
Sbjct: 120 AALSERQRRILLLNRMEGLSHAQIAERLDVSVSTVQKDLKTALLAC 165