Pairwise Alignments

Query, 374 a.a., putative RNA polymerase sigma-70 factor, ECF subfamily/transmembrane sensor protein from Pseudomonas putida KT2440

Subject, 351 a.a., hypothetical protein from Cupriavidus basilensis FW507-4G11

 Score =  101 bits (252), Expect = 3e-26
 Identities = 99/319 (31%), Positives = 134/319 (42%), Gaps = 58/319 (18%)

Query: 99  APEAALLARERLQILDQALL----QLPDNARQALLLNRVEGLTQKQVAQRLGVSESMVAK 154
           A  A  LA  R+ +L Q L     Q+P +  +  L     G T  +V +   VS     K
Sbjct: 43  ADPAHELAWRRMALLGQDLRAGLDQMPPSVARKALHVANPGGTAGRVRRASSVSRRSALK 102

Query: 155 YIGQALRHCRGRLKQAGVAASVVLLVAAVAGWQQ---APILLADYHTAVGERQVITLTDG 211
            I              G+AAS   L      W +      L ADY T  GER+ I L DG
Sbjct: 103 SIAGV-----------GIAASGAWLAREQLSWHRWSALSALAADYRTGSGERRTIALADG 151

Query: 212 TRVTLNSASALSVAFSEHERRVVLDAGEALFETADD--SRPFVVETAGARVQGNAATFSV 269
           TRV LN+ +A+ V F+   R +VL AGE    T  D  +RPF V T    +      F +
Sbjct: 152 TRVVLNTGTAIDVRFAPALRELVLLAGEIQVTTGHDPAARPFTVTTRNGGITPLGTRF-I 210

Query: 270 QRDG--------------HVVLARGEAKVGEHE---------------LAVAADAGTQM- 299
            R+G              +V +  G  ++   +                + A D  + M 
Sbjct: 211 LREGQLSPDGTTYKRDPINVSVLEGAVQIRTRQGGEPFRLDAGQETAFTSTAVDTPSAMH 270

Query: 300 ----AWQRGKLIFNGKPLGQVLTELERYRHGRIVLSDSKLAAMEVSGVFDLDEPEALLRT 355
               AW  G L+    PLGQ + EL RYR G +   D  LAA+ VSG F LD  +A+L  
Sbjct: 271 PQASAWLDGMLVAEQMPLGQFIAELARYRAGSL-RCDPALAALRVSGAFPLDNTDAVLAI 329

Query: 356 LEQRYGLKVTYLP--WLAV 372
           LEQ   ++V YL   W+ V
Sbjct: 330 LEQTLPVQVRYLTRYWVRV 348