Pairwise Alignments

Query, 336 a.a., tRNA-dihydrouridine synthase A from Pseudomonas putida KT2440

Subject, 362 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) from Rhodospirillum rubrum S1H

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 91/334 (27%), Positives = 138/334 (41%), Gaps = 33/334 (9%)

Query: 8   TPHTTRPEPSRRFSVAPMMDWTDRHCRFFLRLLSRQ--TLLYTEMVTTGALLHNDAHRFL 65
           TP    P       +APM   TD     F RL       L +TEMV +  LL   A    
Sbjct: 2   TPSPAFPVSDPLIMLAPMAGVTDSP---FRRLAHDYGCPLSWTEMVASRELLRERARGVD 58

Query: 66  ------RHDASEHPLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGA 119
                        P A+QL G  P  +A  AR  E AG + +++N+GCP  +V   + G+
Sbjct: 59  PRLGGGAEAGRAGPFAVQLAGCDPLIMAEAARRVEGAGAELIDINMGCPVRKVVGGLGGS 118

Query: 120 CLMAHPALVADCVKAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHA 179
            LM    L A  ++A+  AV+ PV++K R+G +  D+     +       AG    TVH 
Sbjct: 119 ALMRDLPLAARILEAVVGAVTLPVSLKMRLGWD--DASRNAVELARLAESAGISRLTVHG 176

Query: 180 RIAILEGLSPKENREIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHLET--FDGV 237
           R          + R   P     A  L +    L ++ NG +  L E +  L     DGV
Sbjct: 177 RTR----AQMYDGRADWP-----AIGLVKRAVSLPVIANGDVTNLSEAREILAVTGADGV 227

Query: 238 MLGREAYHNPYLLAEVDQQLFGSDAPVVSRSEALAQLRPYIVAHMESGGAMHHVTRHILG 297
           M+GR A   P+L   + + +        +   ALA+    + AH+E   A H       G
Sbjct: 228 MIGRAALGAPWLPGAIARAIAAGTRE--TPPPALAERAAVMAAHLEGLLACH-------G 278

Query: 298 LAQGFKGARRFRQLLSADIHKAAEPLAVFDQAVE 331
           L +G K +R+     +  + + A+  A +  A +
Sbjct: 279 LERGLKTSRKHMGWYARTMPQGADFRAAYMAAAD 312