Pairwise Alignments

Query, 336 a.a., tRNA-dihydrouridine synthase A from Pseudomonas putida KT2440

Subject, 349 a.a., Dihydrouridine synthase TIM-barrel protein yjbN (NCBI) from Rhodospirillum rubrum S1H

 Score =  337 bits (863), Expect = 3e-97
 Identities = 174/307 (56%), Positives = 209/307 (68%), Gaps = 7/307 (2%)

Query: 13  RPEPSRRFSVAPMMDWTDRHCRFFLRLLSRQTLLYTEMVTTGALLHNDAHRFLRHDASEH 72
           R +P RR SVAPMMDWTDRH R+FLR ++++TLLYTEM+T  ALLH D  RFL H   EH
Sbjct: 14  RSQPDRRLSVAPMMDWTDRHDRWFLRQITKRTLLYTEMITAQALLHADPGRFLDHHPDEH 73

Query: 73  PLALQLGGSVPADLAACARLAEEAGYDEVNLNVGCPSDRVQNNMIGACLMAHPALVADCV 132
           PLALQLGGS P  LA   RLA   G+ E+NLNVGCPSDRV +   GACLMA PALVA+C+
Sbjct: 74  PLALQLGGSDPRALAEATRLAAPFGFAEINLNVGCPSDRVSSGRFGACLMADPALVAECL 133

Query: 133 KAMRDAVSTPVTVKHRIGINGRDSYAELSDFVGQVREAGCRSFTVHARIAILEGLSPKEN 192
            AM +A + PVT+KHRIGI+  DSY +L  FV QV  +G  +  VHAR A L+GLSPKEN
Sbjct: 134 SAMAEASNAPVTIKHRIGIDDLDSYDQLVGFVDQVARSGIATIIVHARKAWLKGLSPKEN 193

Query: 193 REIPPLRYDIAAQLKRDFPDLEIVLNGGIKTLDECQAHL-------ETFDGVMLGREAYH 245
           REIPPLR+D+  +LK DFP LE++LNGGI TL +   HL          DGVM+GR AY 
Sbjct: 194 REIPPLRHDVVHRLKADFPGLEVILNGGITTLTQALDHLGSGDPAAPAVDGVMIGRAAYE 253

Query: 246 NPYLLAEVDQQLFGSDAPVVSRSEALAQLRPYIVAHMESGGAMHHVTRHILGLAQGFKGA 305
            PY+LA+ D  +FG   P  SR E    L PY+ A    G  +  +TRHILGL  G  GA
Sbjct: 254 TPYMLAQADGLIFGEATPAPSRHEVALALLPYLDAMTARGEPVKRLTRHILGLFHGQPGA 313

Query: 306 RRFRQLL 312
           R +R+ L
Sbjct: 314 RAYRRHL 320