Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1171 a.a., transcription-repair coupling factor from Sinorhizobium meliloti 1021

 Score =  744 bits (1922), Expect = 0.0
 Identities = 448/1152 (38%), Positives = 669/1152 (58%), Gaps = 49/1152 (4%)

Query: 17   TWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETL 76
            T G +P  A +L +AE A +      +L+   + AD LEQ L F APD+PVL  P W+ L
Sbjct: 20   TIGPVPTGAEALVLAELARAGAPVAYILSDGQKVAD-LEQVLGFVAPDIPVLTLPGWDCL 78

Query: 77   PYDLFSPHQDIISQRIASLYRLPELSH------GILVVPITTALHRLAPTRFLLGSSLVL 130
            PYD  SP  D  ++R+A+L  L  ++H       I++V I  AL R++P   +   +   
Sbjct: 79   PYDRVSPSADTSARRLAALSAL--IAHRRKPHPAIVLVTINAALQRISPQDVIESLAFTA 136

Query: 131  DVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIE 190
              G  I ++ +  RLE +G+  V TV E GEFAVRG ++D++  GS  P R+D F + +E
Sbjct: 137  RPGNQIRMDDLAARLERNGFERVPTVREMGEFAVRGGILDVYVPGSGEPLRLDFFGDTLE 196

Query: 191  TLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLAS 250
             +R+FDP +QR+I +V S+ L P  E  +  E ++ F+ ++   F    R  A++Q ++ 
Sbjct: 197  AIRSFDPASQRTIGQVRSLDLNPMSEVSLTPETISHFRKQYLSLFGAATRDDALYQAVSE 256

Query: 251  GIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHF-----WNDVR------ 299
            G   AG+E++LPLF++   T+FDYL     V      E AAE       + D R      
Sbjct: 257  GRRYAGMEHWLPLFYDRLETVFDYLDGFRIVTDHLAREAAAERSKLVLDYYDARLASASP 316

Query: 300  GRYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPN 359
            G+ +  +G   +P+ PP  L+L  +     L     V +S      G  R+     A   
Sbjct: 317  GKSQVTQGTPYKPV-PPDMLYLTAKGFGEALNDLNAVRLSPFTEHEGEARQVVNIEARQG 375

Query: 360  LAIEAKANQPLAE--LANFLDQFP----------GRVLFTAESAGRREVLLELLER---L 404
            L     A +   +    N  DQ             +V+ +  + G  + LL++L      
Sbjct: 376  LRWAKPAGEADNDGTRTNVFDQAVKHIAEKRAKGAKVIVSGWTEGSLDRLLQVLAEHGLA 435

Query: 405  KLRPHTVEGWDDFIT-GAERLAITIAPLDDGLLLDDPGLALIAESPLFGQRVMQRRRRDK 463
             +RP  V+   D  +      A  +  L+ G    D  L +I E  + G R+++R +R K
Sbjct: 436  NIRP--VKALSDIGSLKPGEAASAVLSLEAGFETGD--LVVIGEQDILGDRLVRRSKRRK 491

Query: 464  RGETANDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYV 523
            RG       I  +T L EG+ VVH +HG+GR++GL T+E  G   + L L YA++AKL++
Sbjct: 492  RGAD----FIAEVTGLDEGSYVVHAEHGIGRFVGLRTIEAAGAPHDCLELVYADDAKLFL 547

Query: 524  PVANLHLIARYTGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGY 583
            PV N+ L++RY GS+   A L +LG  AWQ  K K  +++ D+A  L+ I A R  R   
Sbjct: 548  PVENIELLSRY-GSEGTDAVLDKLGGVAWQARKAKLKKRLLDMAGGLIRIAAERHTRHAP 606

Query: 584  AFADPSADYATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRA 643
              A     Y  F+A FP++ET DQ  +I+AVR D+   +PMDRLVCGDVGFGKTEVA+RA
Sbjct: 607  VLAAQDGVYDEFAARFPYDETEDQLNSIDAVRDDLGRGRPMDRLVCGDVGFGKTEVALRA 666

Query: 644  AFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAE 703
            AFIA  +G QVAV+VPTTLLA+QH+ +F DRF   P+ ++  SR   +K++A    ++AE
Sbjct: 667  AFIAAMNGVQVAVVVPTTLLARQHFKTFSDRFRGLPIRIQQASRLVGSKDLALTKKEVAE 726

Query: 704  GKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPR 763
            GK DI++GTH LL   ++F +LGL IIDEE  FGV+ KE+LK L+++V +LTL+ATPIPR
Sbjct: 727  GKTDIVVGTHALLGSSIKFANLGLLIIDEEQHFGVKHKERLKELKTDVHVLTLSATPIPR 786

Query: 764  TLNMAVAGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKT 823
            TL +A+ G+R+LS+I TPP  R++VRTF+   +   ++E L+RE  RGGQ +Y+   V  
Sbjct: 787  TLQLALTGVRELSLITTPPVDRMAVRTFISPFDALVIRETLMREHYRGGQSFYVCPRVSD 846

Query: 824  IEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSAN 883
            + +    L   VPE ++ + HGQM   ELE +M+ FY  R++VL+++TI+E+G+DVP+AN
Sbjct: 847  LPEIHDFLKSDVPELKVAVAHGQMPATELEDIMNAFYEGRYDVLLSTTIVESGLDVPTAN 906

Query: 884  TIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGA 943
            T+++ RAD FGLAQL+QLRGRVGRS  +A+A    P  + ++  AE+RL+ + +   LGA
Sbjct: 907  TLIVHRADMFGLAQLYQLRGRVGRSKVRAFALFTLPVNKTLTGPAERRLKVLQSLDTLGA 966

Query: 944  GFVLATNDLEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGG 1003
            GF LA++DL+IRGAG LLGE QSG I+ VGF LY +MLE AV  + KG +       G  
Sbjct: 967  GFQLASHDLDIRGAGNLLGEEQSGHIKEVGFELYQQMLEEAVAEL-KGEEE--IHDTGWS 1023

Query: 1004 PEINLRLPALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLM 1063
            P+I++  P +IPE+Y+PD++ RL LY+R+    D + +     E+IDRFG LP   ++L+
Sbjct: 1024 PQISVGTPVMIPEEYVPDLNLRLGLYRRLGELTDLKEIDGFGAELIDRFGPLPTEVQHLL 1083

Query: 1064 RLTSLKLHAEKLGIKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRF 1123
            ++  +K       ++K+DAGP G  ++F  +   +P  L+  I  Q    K        F
Sbjct: 1084 KIVYVKSLCRTANVEKLDAGPKGVVVQFRNKEFPNPAALVGYIAKQGTVAKIRPDQSIFF 1143

Query: 1124 LVPMERPDERFN 1135
               +  P++R +
Sbjct: 1144 QRELATPEKRLS 1155