Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 691 a.a., ATP-dependent DNA helicase RecG (RefSeq) from Shewanella amazonensis SB2B

 Score =  244 bits (623), Expect = 2e-68
 Identities = 168/455 (36%), Positives = 239/455 (52%), Gaps = 28/455 (6%)

Query: 539 DALAPLHR--LGSEAWQKAKRKAAEQVRDVAAELLD---IYARRAARKGYAFADPSADYA 593
           DA+  LHR    +E WQ  + +   Q R V  ELL       +   R     A+P A   
Sbjct: 194 DAVRTLHRPPADAELWQLEQGQHPAQQRLVQEELLAHNLSMLKLRERSNQDAAEPLAATG 253

Query: 594 T----FSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVH 649
                F    PF  T  Q   +  + ADM    PM RLV GDVG GKT VA  +A  A+ 
Sbjct: 254 QLIPRFLESLPFAPTNAQSRVVAEIHADMTKATPMMRLVQGDVGSGKTLVAALSALAAIE 313

Query: 650 SGRQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDIL 709
           +G QVA++ PT LLA+QH  +F   F    + V  ++     K       D+A G   ++
Sbjct: 314 NGCQVALMAPTELLAEQHAANFARWFEPLGLKVGWLAGKLKGKARTQTLEDIASGAAQMI 373

Query: 710 IGTHKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDI----LTLTATPIPRTL 765
           +GTH + Q+ V F  L L IIDE+HRFGV Q+  L+    +       L +TATPIPRTL
Sbjct: 374 VGTHAIFQEQVSFSRLALTIIDEQHRFGVHQRLGLREKGIQQGFFPHQLIMTATPIPRTL 433

Query: 766 NMAVAGMRDLSIIATPPARRLSVRTFVMEQNK-----STVKEALLRELLRGGQVYYLHND 820
            M      D SII   P  R  + T  +   +       V++A L++  +   V  L  +
Sbjct: 434 AMTAYADLDTSIIDELPPGRTPITTVAIPDTRRLDVIERVRQAALQDKRQAYWVCTLIEE 493

Query: 821 VKTIEKCAAD-----LAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIET 875
            + +E  AA+     L E +PE  IG+ HG+M+  E + +M+DF   + ++LVA+T+IE 
Sbjct: 494 SEVLECQAAEDTAGGLKEALPELGIGLVHGRMKGAEKQAIMADFKAGKLDLLVATTVIEV 553

Query: 876 GIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAI 935
           G+DVP+A+ ++IE  ++ GLAQLHQLRGRVGR    ++  LL   +  +S  A+ RL  +
Sbjct: 554 GVDVPNASLMIIENPERLGLAQLHQLRGRVGRGAVASHCVLL--YKAPLSFTAQARLGVL 611

Query: 936 ANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQ 970
             + D   GFV+A  DLE+RG GE+LG  Q+G  Q
Sbjct: 612 RESND---GFVIAQKDLELRGPGEVLGTRQTGLAQ 643