Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Shewanella loihica PV-4

 Score = 1246 bits (3223), Expect = 0.0
 Identities = 639/1150 (55%), Positives = 847/1150 (73%), Gaps = 11/1150 (0%)

Query: 2    SVLRLPQMSATAGKQTWGNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFF 61
            S+L  P++      QT   L GAA ++++A+        TL++T D+ +A RLE EL + 
Sbjct: 5    SILTPPKVKGVKSPQTLSQLTGAARAISLAKLCEQYSSMTLVVTPDTPSALRLEAELGYL 64

Query: 62   -AP-DLPVLPFPDWETLPYDLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAP 119
             AP  +PV+ FPD ETLPYD FSPHQD++SQR+ +L R+P   H +++VP++T + +L P
Sbjct: 65   LAPKSIPVMLFPDRETLPYDSFSPHQDLVSQRLETLSRIPSAGHSLVIVPMSTLMVKLPP 124

Query: 120  TRFLLGSSLVLDVGQTIDVEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLP 179
              FL G+ L+L  G    +E +R +L  +GY  V+ VYEHGEFAVRG++IDLFPMG++ P
Sbjct: 125  QSFLTGNVLLLSKGDNYPLEAVRSQLVNTGYHHVEQVYEHGEFAVRGSIIDLFPMGAQSP 184

Query: 180  YRIDLFDNEIETLRTFDPETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDF 239
            YRI+LFD+E+E++R FDPETQRS  +++S+RLLPA+EFP     +  F+ R+R +F+V  
Sbjct: 185  YRIELFDDEVESIREFDPETQRSSGEIESIRLLPAKEFPTNDAAIEGFRQRYRRQFEVVV 244

Query: 240  RR-SAIFQDLASGIIPAGIEYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHFWNDV 298
            +   +I+Q ++  ++PAGIE YLPLFF+ET++LFDYLP + Q+  +  +E AA+H   ++
Sbjct: 245  KEPESIYQMVSRKVMPAGIESYLPLFFDETASLFDYLPGECQLVQVGDLENAAKHHLQEI 304

Query: 299  RGRYEDRRGDLSRPLLPPAELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALP 358
              RYE+RR D  RPLLPP +L+L  E  F   KQ PR ++   E        +    ALP
Sbjct: 305  NQRYENRRVDPLRPLLPPKDLYLLTEQVFEAFKQLPRFLIKGNEATGTCVEAQL--EALP 362

Query: 359  NLAIEAKANQPLAELANFLDQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFI 418
            N+A   K  QPL  L  F +     +LF  ES GRRE LLELL +++++P  ++  D F 
Sbjct: 363  NIAANHKLKQPLISLKEFANGGTP-ILFCVESEGRREALLELLAKIEIKPALLDHLDSFS 421

Query: 419  TGAERLAITIAPLDDGLLLDD---PGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKN 475
               +   + +APL  G +      P  AL+ E+ LFGQR+ Q+RRRDK+ + + DA+IK+
Sbjct: 422  HKPQPFGLIVAPLSQGAIYHPKKGPSWALVCETELFGQRIAQQRRRDKQRQVSQDALIKD 481

Query: 476  LTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYT 535
            L EL+ G P+VH+DHGV  Y GL TL+  G  AE+L LEYA   KLYVPVA+L+LI++Y+
Sbjct: 482  LAELKVGQPIVHLDHGVALYQGLETLDTGGLVAEYLKLEYAGGDKLYVPVASLNLISQYS 541

Query: 536  -GSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSADYAT 594
             G+DDA   L++LG+E+W KAKRKA E++RDVAAELLD+YARR AR G A      +YA 
Sbjct: 542  VGADDA-PQLNKLGNESWTKAKRKAIEKIRDVAAELLDVYARRQARPGEACRLDREEYAQ 600

Query: 595  FSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQV 654
            F+  FPFEET DQ+ AI+AV  DM +P  MDRLVCGDVGFGKTEVAMRAAF+AV+ G+QV
Sbjct: 601  FAGSFPFEETVDQETAIDAVLTDMCSPISMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQV 660

Query: 655  AVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHK 714
            A+LVPTTLLAQQHY +F+DRFADWP+ +EVMSRFK+AKE  A    L  G++DI+IGTHK
Sbjct: 661  AILVPTTLLAQQHYENFKDRFADWPIKIEVMSRFKTAKEQQAVLKQLELGQVDIVIGTHK 720

Query: 715  LLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRD 774
            LLQ + +F++LGL IIDEEHRFGVRQKE++KALR+ +DILTLTATPIPRTLNMA++GMRD
Sbjct: 721  LLQSEAKFENLGLLIIDEEHRFGVRQKEKIKALRANIDILTLTATPIPRTLNMAMSGMRD 780

Query: 775  LSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAEL 834
            LSIIATPPA+RL+V+TFV E + +TV+EALLRE+LRGGQVY+LHN V+TIEK A ++  L
Sbjct: 781  LSIIATPPAKRLAVKTFVREYDDATVREALLREILRGGQVYFLHNSVETIEKRAREIEAL 840

Query: 835  VPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFG 894
            +PEAR+   HGQMRER+LE+VMSDFYH+++NVLV +TIIETGIDVPSANTI+IERAD FG
Sbjct: 841  LPEARVVTAHGQMRERDLEKVMSDFYHQKYNVLVCTTIIETGIDVPSANTIIIERADNFG 900

Query: 895  LAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEI 954
            LAQLHQLRGRVGRSHHQAYAYL+ P  ++++ DA KRLEAI   +DLGAGF+LAT DLEI
Sbjct: 901  LAQLHQLRGRVGRSHHQAYAYLMMPHPKRMTKDAIKRLEAIGALEDLGAGFMLATQDLEI 960

Query: 955  RGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALI 1014
            RGAGELLG+ QSG I  +GFTLYMEMLE AVK++++G +P+L+Q L G  EI+LR+PAL+
Sbjct: 961  RGAGELLGDEQSGHISKIGFTLYMEMLEDAVKSLKEGKEPSLDQMLRGQCEIDLRIPALL 1020

Query: 1015 PEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEK 1074
            PEDY+ DV+ RL LYKRIA+ A  + L +L+VE+IDRFGLLP+ TKNLM ++  K  A  
Sbjct: 1021 PEDYVGDVNIRLSLYKRIANCATAQALDELKVELIDRFGLLPQATKNLMEVSLFKHQATA 1080

Query: 1075 LGIKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERF 1134
            LGI K++    GG LEF  +  VDP  +I L+Q QP+ Y+ +G ++ +FL+P E   +R 
Sbjct: 1081 LGIAKIEMHAKGGSLEFNNDHCVDPGFIIGLLQSQPQNYRMDGPSKLKFLMPTETDKDRL 1140

Query: 1135 NTLEALFERL 1144
              L  +  +L
Sbjct: 1141 ALLSLIISQL 1150