Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1148 a.a., transcription-repair coupling factor from Klebsiella michiganensis M5al

 Score = 1241 bits (3211), Expect = 0.0
 Identities = 628/1127 (55%), Positives = 826/1127 (73%), Gaps = 5/1127 (0%)

Query: 19   GNLPGAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPY 78
            G L GAA +  +AE A   G   +L+  D Q A RL  E+R F  D  V    DWETLPY
Sbjct: 20   GELTGAACATLVAEMAERHGGPVVLIAPDMQNALRLNDEIRQFT-DSMVAGLADWETLPY 78

Query: 79   DLFSPHQDIISQRIASLYRLPELSHGILVVPITTALHRLAPTRFLLGSSLVLDVGQTIDV 138
            D FSPHQDIIS R+A+LY+LP +  G+L++P++T + R+ P  FL G +LV+  GQ +  
Sbjct: 79   DSFSPHQDIISSRLATLYQLPTMERGVLIIPVSTLMQRVCPHNFLHGHALVMKKGQRLSR 138

Query: 139  EQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDPE 198
            + +R +L+++GYR VD V EHGE+A RGAL+DLFPMGS+ PYR+D FD+EI++LR FD +
Sbjct: 139  DALRAQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDVD 198

Query: 199  TQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAGIE 258
            +QR++++V S+ LLPA EFP  +  +  F++++R+RF+V      I+Q ++ G +PAGIE
Sbjct: 199  SQRTLEEVASINLLPAHEFPTDQAAIELFRSQWRDRFEVKRDAEHIYQQVSKGTLPAGIE 258

Query: 259  YYLPLFFEET-STLFDYLPTDTQVFSLPGVEQAAEHFWNDVRGRYEDRRGDLSRPLLPPA 317
            Y+ PLFF E    LF Y P  T + +   +E +AE F N+ R R+E+R  D  RPLLP  
Sbjct: 259  YWQPLFFNEPLPPLFSYFPAKTLIVNTGDLEASAERFQNETRARFENRGVDPMRPLLPTE 318

Query: 318  ELFLPVEDCFARLKQWPRVVVSSEELEPGVGRERFPARALPNLAIEAKANQPLAELANFL 377
            +L+L  ++ F+ LK+WPRV + +E L           + L  LAI+A+   PL  L  FL
Sbjct: 319  QLWLRSDELFSELKKWPRVQLKTERLAEKAANTNLGYQKLHELAIQAQNKAPLDNLRRFL 378

Query: 378  DQFPGRVLFTAESAGRREVLLELLERLKLRPHTVEGWDDFITGAERLAITIAPLDDGLLL 437
            + F G V+F+ ES GRRE L E+L R+K+ P  +   ++       L I  A  + G + 
Sbjct: 379  ESFSGPVIFSVESEGRREALGEMLARIKIAPKHILRLEEATANGRYLMIGAA--EHGFID 436

Query: 438  DDPGLALIAESPLFGQRVMQRRRRDKRGETANDAVIKNLTELREGAPVVHIDHGVGRYLG 497
                LALI ES L G+RV  RRR+D R     D +I+NL EL  G PVVH++HGVGRY G
Sbjct: 437  SQRNLALICESDLLGERVA-RRRQDSRRTINPDTLIRNLAELHIGQPVVHLEHGVGRYAG 495

Query: 498  LATLEIDGQAAEFLTLEYAENAKLYVPVANLHLIARYTGSDDALAPLHRLGSEAWQKAKR 557
            + TLE  G   E+L L YA +AKLYVPV++LHLI+RY G  +  APLH+LG +AW +A++
Sbjct: 496  MTTLEAGGINGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEENAPLHKLGGDAWARARQ 555

Query: 558  KAAEQVRDVAAELLDIYARRAARKGYAFADPSADYATFSAGFPFEETPDQQAAIEAVRAD 617
            KAAE+VRDVAAELLDIYA+RAA+ GYAF      Y  F  GFPFE TPDQ  AI AV +D
Sbjct: 556  KAAEKVRDVAAELLDIYAQRAAKAGYAFKHDKEQYQLFCDGFPFETTPDQAQAINAVLSD 615

Query: 618  MLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSGRQVAVLVPTTLLAQQHYNSFRDRFAD 677
            M  P  MDRLVCGDVGFGKTEVAMRAAF+AV + +QVAVLVPTTLLAQQH+++FRDRFA+
Sbjct: 616  MCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHFDNFRDRFAN 675

Query: 678  WPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIGTHKLLQDDVRFKDLGLAIIDEEHRFG 737
            WPV +E++SRF+SAKE A     +AEGKIDILIGTHKLLQ DV+ +DLGL I+DEEHRFG
Sbjct: 676  WPVRIEMLSRFRSAKEQAQILEQVAEGKIDILIGTHKLLQPDVKLRDLGLLIVDEEHRFG 735

Query: 738  VRQKEQLKALRSEVDILTLTATPIPRTLNMAVAGMRDLSIIATPPARRLSVRTFVMEQNK 797
            VR KE++KA+R++VDILTLTATPIPRTLNMA++GMRDLSIIATPPARRL+V+TFV E + 
Sbjct: 736  VRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDA 795

Query: 798  STVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMS 857
              V+EA+LRE+LRGGQVYYL+NDV+ I+K A  LAELVPEARI IGHGQMRERELE+VM+
Sbjct: 796  LVVREAILREVLRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMN 855

Query: 858  DFYHKRFNVLVASTIIETGIDVPSANTIVIERADKFGLAQLHQLRGRVGRSHHQAYAYLL 917
            DF+H+RFNVLV +TIIETGID+P+ANTI+IERAD FGLAQLHQLRGRVGRSHHQAYA+LL
Sbjct: 856  DFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWLL 915

Query: 918  TPTRQKVSADAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELLGEGQSGQIQAVGFTLY 977
            TP  + ++ DA+KRLEAIA+ +DLGAGF LAT+DLEIRGAGELLGE QSG ++ +GF+LY
Sbjct: 916  TPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEDQSGSMETIGFSLY 975

Query: 978  MEMLERAVKAIRKGTQPNLEQPLGGGPEINLRLPALIPEDYLPDVHARLILYKRIASAAD 1037
            ME+LE AV A++ G +P+LE       E+ LR+P+L+P+D++PDV+ RL  YKR+ASA +
Sbjct: 976  MELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRVASAKN 1035

Query: 1038 EEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKLHAEKLGIKKVDAGPNGGKLEFEAETPV 1097
            E  L++++VE+IDRFGLLP+P +NL+ +  L+  A+KLGI+K+++   GG +EF  +  V
Sbjct: 1036 ENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLESNEKGGTIEFNEKNNV 1095

Query: 1098 DPLTLIKLIQGQPKRYKFEGATQFRFLVPMERPDERFNTLEALFERL 1144
            +P+ LI L+Q QP+ Y+ +G T+ +F+  +     R   +     +L
Sbjct: 1096 NPVWLISLLQKQPQHYRLDGPTRLKFMQDLAERKTRMEWVRQFMRQL 1142