Pairwise Alignments

Query, 1149 a.a., transcription-repair coupling factor from Pseudomonas putida KT2440

Subject, 1160 a.a., transcription-repair coupling factor (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  763 bits (1970), Expect = 0.0
 Identities = 457/1119 (40%), Positives = 647/1119 (57%), Gaps = 54/1119 (4%)

Query: 23   GAALSLAIAEAASSAGRFTLLLTADSQAADRLEQELRFFAPDLPVLPFPDWETLPYDLFS 82
            G    + + EA+   G+   +   D + A  +   L   AP +PVL FP W+ LPYD  S
Sbjct: 18   GFDAQIVLREASRPDGQAVFVARDDKRMA-AMAAALAVTAPQIPVLRFPGWDCLPYDRSS 76

Query: 83   PHQDIISQRIASLYRLPELSHGI-----LVVPITTALHRLAPTRFLLGSSLVLDVGQTID 137
            P+ +I + R+A+L     L+HG+     L+  ++    R+     L  +S    VG  ID
Sbjct: 77   PNPEISATRMATL---AALAHGVPGPFVLLTTLSAVTQRVPARATLAEASFSAQVGGRID 133

Query: 138  VEQMRLRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDNEIETLRTFDP 197
               +R  L   G+    TV E G++A+RG +ID+FP G   P R+DLF + ++  R FD 
Sbjct: 134  EAALRQFLTRMGFVQAPTVTEPGDYAIRGGIIDIFPPGQSGPVRLDLFGDVLDGARRFDA 193

Query: 198  ETQRSIDKVDSVRLLPAREFPMQKEEVTRFKARFRERFDVDFRRSAIFQDLASGIIPAGI 257
             TQR+ +K+D++ L P  E  +    +TRF+  +R  F        +++ +++G   AG+
Sbjct: 194  ATQRTTEKLDAIELAPVSEIILDPAAITRFRQSYRIEFGAAGTDDPLYEAVSAGRKHAGM 253

Query: 258  EYYLPLFFEETSTLFDYLPTDTQVFSLPGVEQAAEHF--WNDVRGRYEDRR--------- 306
            E++LP F +   TL DY+P  + +      +  A H   W  ++ +YE RR         
Sbjct: 254  EHWLPFFHDRLETLLDYVPEASLILD---DQFEAMHLSRWEGIKDQYETRRHALAQKGQM 310

Query: 307  GDLSRPLLPPAELFLPVEDCFARL--KQWPRVVVSSEELEPGV-------GRERFPARAL 357
            G + +P  PP  L++P  D  A L  K+  ++ V      PGV       GR   P R  
Sbjct: 311  GTVYKPA-PPETLYIPPADETALLATKRTLQLSVLPSASGPGVTDAGGRIGRNFAPER-- 367

Query: 358  PNLAIEAKANQPLAELANFLDQF--PGRVLFTAESAGRREVLLELLERLKLRPHT-VEGW 414
                 +++A      LA  + +     +V+  + S G RE L  LLE   L   T +   
Sbjct: 368  -----QSQATGLFEALATHITEKRKTSQVVIASWSEGARERLRGLLEDQDLSGLTEIARL 422

Query: 415  DDFITGAERLAITIAPLDDGLLLDD---PGLALIAESPLFGQRVMQRRRRDKRGETANDA 471
             D   G   + + +  LD+G    D     L +I+E  + G R+++  +R +R E     
Sbjct: 423  SDIPEGTGGVHLLVWALDEGFEGPDHRSTRLTVISEQDVLGDRLIRTTKRKRRAEN---- 478

Query: 472  VIKNLTELREGAPVVHIDHGVGRYLGLATLEIDGQAAEFLTLEYAENAKLYVPVANLHLI 531
             ++  T L  G  VVH+DHGVG + GL T+   G   E L LEYA   +LY+PV N+ L+
Sbjct: 479  FLQEATSLSAGDLVVHVDHGVGAFKGLETVTAMGAPHECLLLEYAGGDRLYLPVENIELL 538

Query: 532  ARYTGSDDALAPLHRLGSEAWQKAKRKAAEQVRDVAAELLDIYARRAARKGYAFADPSAD 591
            +R+      +  L +LG  AWQ  K K  E++R++A +L+ I A RA R+      P   
Sbjct: 539  SRF---GQEIGMLDKLGGGAWQAKKAKLKERIREMADKLIRIAAERALRRAPMLEPPPDM 595

Query: 592  YATFSAGFPFEETPDQQAAIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHSG 651
            +  FSA FP+ ET DQ +AIE V  D+ A  PMDRL+CGDVGFGKTEVAMRAAFIA  SG
Sbjct: 596  WEAFSARFPYTETDDQLSAIEDVVHDLAAGTPMDRLICGDVGFGKTEVAMRAAFIAALSG 655

Query: 652  RQVAVLVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVAAAAADLAEGKIDILIG 711
             QVAV+ PTTLLA+QHY SF DRF  +P+ V  +SRF  AK  A     LA G +DI++G
Sbjct: 656  VQVAVIAPTTLLARQHYKSFADRFRGFPLEVRPLSRFVPAKAAADTRKGLAAGSVDIVVG 715

Query: 712  THKLLQDDVRFKDLGLAIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVAG 771
            TH LL   VRF +LGL IIDEE RFGV  KE+LK LRS+V +LTLTATPIPRTL ++++G
Sbjct: 716  THALLAKGVRFHNLGLLIIDEEQRFGVGHKERLKELRSDVHVLTLTATPIPRTLQLSLSG 775

Query: 772  MRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADL 831
            +RDLSII TPP  RLS+RT+V E +  T++EALLRE  RGGQ +++   +K I +  A L
Sbjct: 776  VRDLSIIGTPPVDRLSIRTYVSEFDPVTLREALLREHYRGGQSFFVVPRIKDIPEIEAFL 835

Query: 832  AELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLVASTIIETGIDVPSANTIVIERAD 891
             + VPE    + HGQM   EL+  M+ FY  +++VL+A+TI+E+G+D+P+ANT++I RAD
Sbjct: 836  RDQVPEVSFVVAHGQMAAGELDDRMNAFYDGKYDVLLATTIVESGLDIPTANTMIIHRAD 895

Query: 892  KFGLAQLHQLRGRVGRSHHQAYAYLLTPTRQKVSADAEKRLEAIANTQDLGAGFVLATND 951
             FGL+QL+Q+RGRVGR+  +AYAYL T  R K++  AEKRL  + +   LGAGF LA+ D
Sbjct: 896  MFGLSQLYQIRGRVGRAKTRAYAYLTTKPRMKLTPAAEKRLRVLGSLDSLGAGFTLASQD 955

Query: 952  LEIRGAGELLGEGQSGQIQAVGFTLYMEMLERAVKAIRKGTQPNLEQPLG-GGPEINLRL 1010
            L+IRGAG LLGE QSGQ + VGF LY  MLE A+  I+ G+   L    G   P+INL +
Sbjct: 956  LDIRGAGNLLGEAQSGQFREVGFELYQSMLEEAIGKIKSGSLEGLTDDDGQWAPQINLGV 1015

Query: 1011 PALIPEDYLPDVHARLILYKRIASAADEEGLKDLQVEMIDRFGLLPEPTKNLMRLTSLKL 1070
            P LIPE Y+PD+  RL LY+R++    +  L+    E+IDRFG LP+    L+ +  +K 
Sbjct: 1016 PVLIPEAYVPDLDVRLGLYRRLSQLTTKVELEGFAAELIDRFGKLPKEVNTLLLIVRIKA 1075

Query: 1071 HAEKLGIKKVDAGPNGGKLEFEAETPVDPLTLIKLIQGQ 1109
              +K GI K+D GP G  ++F  +   +P  L+K I  Q
Sbjct: 1076 MCKKAGIAKLDGGPKGATVQFHNDKFANPAGLVKFINDQ 1114