Pairwise Alignments

Query, 1105 a.a., helicase SNF2/RAD54 family from Pseudomonas putida KT2440

Subject, 1209 a.a., SNF2 helicase-related protein (NCBI) from Rhodospirillum rubrum S1H

 Score =  635 bits (1639), Expect = 0.0
 Identities = 387/857 (45%), Positives = 512/857 (59%), Gaps = 51/857 (5%)

Query: 274  IPLLPLYYLDLPTREVGKVEHSLDPHVAVQLTIAPDVPEHLVVPLSHKLNAL-SHKVPT- 331
            +P+ P  Y+D  + E G ++  LDP +A +L  AP +P   V  +  +L AL    VP  
Sbjct: 372  LPIEPPAYVDPRSGETGPLDLGLDPRLAARLLSAPPIPPTSVDAVRSRLGALLPAAVPVL 431

Query: 332  PTQVQEQLLDNIQPKPLLALGSLEYTAYM---PKTGRMQRQMQHRAALAFDYDGLQASGT 388
            P  +  Q L ++ P+P+L L +L     M      G   + +  R   A+D   L A  +
Sbjct: 432  PAPIDAQPL-SVAPQPILRLLALRAVPRMRGAEMPGETTQALVARPCFAYDSVILPADSS 490

Query: 389  DEKPLTRLAGSTSQRIRRQPQAEQT-LRQMLRDFGFKPATRQSKALPD---SAGEMYQLP 444
            +  PL R+ G++  RI R   AE T LRQ+ R    + A    +   +   SA  +   P
Sbjct: 491  EPAPL-RMVGASLMRIERDFAAEGTALRQLDRIGPLRVAEALGRVRVEGGISADRLIAPP 549

Query: 445  ------DDEAWLRFAREGLPRLREAGWDIDIHRDFAFN--LQEVDDWYATIDEAPGHE-- 494
                  + E  + F R+G+P L EAGW I+I  DF     + +  DW+  ++   G E  
Sbjct: 550  FLPRGEERERAVDFLRDGVPDLEEAGWRIEIDPDFPVRPVVADSQDWWGGLNAVGGLEGT 609

Query: 495  ---WFDLELGIVVDGQRHSLLPIVLHLLRSSPELLRPSELARRSDDEPLLIDLNRGRLDA 551
               W  + LG+ +DG+R  LLP +L LL    +L+       R +DE L + L  GR+  
Sbjct: 610  VGGWLSVGLGVTIDGERVDLLPALLTLLGEGEDLVE------REEDELLYLPLGDGRVLP 663

Query: 552  PALRVALPYGRIKAVMGTLGELYLHEDTAGPSLRMERADAARLNEIE--GLPLH--WEGG 607
             A+R      R++ +   L  + + ++ AGP +R+   D   L  +E  G PL   WEG 
Sbjct: 664  VAVR------RLRPIFHALHAVAVPDERAGPGVRLSGRDLGPLALLEEAGKPLGVVWEGA 717

Query: 608  EHVRDLGRRL-----RDARDLQVEPPTGLQASLRPYQQQGLNWLQALREMGTGGILGDDM 662
            E  RD+ RRL     R+A    V PP GL  SLR YQ +GL+WLQ LR    GGIL DDM
Sbjct: 718  EGARDIARRLAVVGLREA----VAPPKGLVGSLRAYQNEGLDWLQFLRANNLGGILADDM 773

Query: 663  GLGKTLQALAHLLLEKQSGRLSAPALAVMPTSLIPNWLDEAQRFAPDLRVLALHGPGRSK 722
            GLGKTLQ LAH+L+EK+SGRL+ P L V PTS++  W  EA +FAP LR++ LHGP R+ 
Sbjct: 774  GLGKTLQTLAHILVEKESGRLNDPVLIVAPTSVLGAWRREAAQFAPGLRLVVLHGPERAA 833

Query: 723  HFTKLHEYDLVLTTYALMPRDLEQLRPQAWHVLILDEAQNIKSSSSKAALAVCELQAGQR 782
             F+++ + D+V+T+YAL+  DLE L+ Q WH+L+LDEAQ I++  +    AV  L+A  R
Sbjct: 834  GFSQMADQDVVVTSYALVRHDLEVLKAQPWHMLVLDEAQTIRNPQTVQYKAVAALKARHR 893

Query: 783  LCLTGTPMENNLGELWSIFHFLMPGWLGDLKRFNQDYRNPIERHGDSERMAHLASRIRPF 842
            L LTGTP+EN+LG+LW++   LMPG LGD   F + +R PIE+ GD  R   LA R+RPF
Sbjct: 894  LFLTGTPLENHLGDLWALMDLLMPGLLGDGATFRRVFRGPIEKRGDGPRRRALAVRVRPF 953

Query: 843  LLRRTKEQVATELPAKTEMVHWVELSDAQRDTYEAVRVAMDQKVRDEIARNGAARSQIVI 902
            +LRRTK++VAT+LPAKTEM+  VEL   QRD YEAVR+A  + +R+ +A  G AR +I I
Sbjct: 954  ILRRTKDEVATDLPAKTEMIDMVELEGGQRDLYEAVRLAAHKAIREVLAEKGLARGRIHI 1013

Query: 903  LDALLKLRQVCCDLRLVKGVESKGNQADKGKLGALLEMLEELLSEGRRVLLFSQFTSMLA 962
            L AL +LRQVCCD RLVKG   K       KL  L EML +L+ EGRR L+FS F SMLA
Sbjct: 1014 LAALTRLRQVCCDPRLVKGGPRK--PPPSAKLDRLEEMLRDLVDEGRRTLVFSAFPSMLA 1071

Query: 963  LIEQELEKRKIRYSLLTGDTRDRRTPVQQFQQGESEVFLISLKAGGVGLNLTAADTVIHF 1022
            L+E+ L    I +  LTG+TRDR TPV +FQ G   VFLISLKAGG GL LTAADTVIH+
Sbjct: 1072 LVEERLAAASIPWVSLTGETRDRDTPVTRFQSGAVPVFLISLKAGGTGLTLTAADTVIHY 1131

Query: 1023 DPWWNPASENQATDRAYRIGQDKPVFVFKLITRGTVEEKIQLLQQEKAALAASLLDGGQA 1082
            DPWWNPA E QATDRA+RIGQDKPVFV KL+  GTVEE+I  LQ  K  L   L DG   
Sbjct: 1132 DPWWNPAVEAQATDRAHRIGQDKPVFVHKLVAAGTVEERILALQDRKRGLLDGLFDGEAG 1191

Query: 1083 GQWRLGDEEIEALFAPL 1099
                L +E IE +  PL
Sbjct: 1192 PSSLLSEEVIEEILRPL 1208



 Score = 56.6 bits (135), Expect = 1e-11
 Identities = 73/291 (25%), Positives = 109/291 (37%), Gaps = 53/291 (18%)

Query: 25  QRGERYAEEGRA-ELEGIHGPTITASCQGSGNNHYRQRIELHVAGGHCHVRGDCDCPVRH 83
           QRGE Y ++GR  + E +    I+    GS    Y Q I L    G   + G C CPV  
Sbjct: 20  QRGEEYLKDGRVLKAEWVADDEISGQVAGSAGRRYVQTITLENGLGGLSIVGYCSCPVGF 79

Query: 84  NCKHCAAVLFCVS-----------DRFSRREATQA-NPGALSAELQHWLSGL-------- 123
            CKH AAVL  ++             F  R A  A +   L   L  W++ +        
Sbjct: 80  ACKHVAAVLLTLAREAEPVVPAWDGSFGARPAQAAVSEPTLDPALAEWIAAVAGFEEVGD 139

Query: 124 -EQAPPK---------------------ADATEDKRGRMVCYQLQLTDDAGCALLVRKGT 161
            E  PP                         +E + G  V  ++++T  +   L   + +
Sbjct: 140 PEAYPPAIRHRLIYVVGPQGEGGVPQNGEGRSESRGGGRVSAEIEVTLWSIAVLKDGQMS 199

Query: 162 RTEDGIRFSRVQSLYDFLYEP--PRFVTDEDIRILRLLSALNQGGGQDRGYRLKGHEGGE 219
             E      R+ S    +  P  P ++   D+ ++  L+AL   GG      L    G E
Sbjct: 200 SVE-----RRILSADALVRSPARPAYLRPSDLALVPRLAALRAPGG-GNALLLPQISGSE 253

Query: 220 LFQRALETGR-MFFDTDLPLLHEGPVRHAEFRWVRLDNGNYRGRWYSGEAM 269
           LF   + +GR  +   D P L+ G  R A+  W R D   ++      EAM
Sbjct: 254 LFAAMVASGRCRWGGPDGPTLYPGAARRAKLVW-RSDGEGWQRPAIEPEAM 303