Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 655 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  163 bits (413), Expect = 3e-44
 Identities = 159/601 (26%), Positives = 252/601 (41%), Gaps = 66/601 (10%)

Query: 88  KYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNE 147
           + E+ P      + ++ L  +A T+ +ATD DREGE IA  L E      +  +R+  + 
Sbjct: 72  RVEVKPKTVAQFKIIKHLLSEATTVVIATDADREGEMIARELLEICNYRGS-VERLWLSA 130

Query: 148 ITKKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAG 200
           + + +I++A S  +  +      ++  AR   D ++G  +S L      R      LS G
Sbjct: 131 LNEASIRKALSSLKSSQETFPLYHSALARSRADWLIGMNLSRLFTLLGRRAGYDGVLSVG 190

Query: 201 RVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKG--EAFKPLNEA 258
           RVQ+  ++LVVER+R I +F+   YW +   L +     +   +    G  EA + L +A
Sbjct: 191 RVQTPTLRLVVERDRAIASFVSVPYWVVDVHLSSMGQPFIASWIPPNSGRDEAGRCLQQA 250

Query: 259 QAMAALEKLKAS-SYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRL 317
            A   L+ L +S + +VV  +       P  PF  STLQ+  S +LG G ++T+  AQ L
Sbjct: 251 LASQTLQALSSSKTATVVSLQTEHLREAPPLPFDLSTLQEVCSRKLGLGAQETLNNAQAL 310

Query: 318 YEAGYIT-YMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQE------- 369
           YE    T Y R+D   L     +   +  +       L   P +  +  G  +       
Sbjct: 311 YETHKATSYPRSDCRYLPESMFNEVAAVFD-----ALLRMDPALRPALGGVDQSLRSRAW 365

Query: 370 ------AHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAA 423
                 AH AI P+   T P  L  M     ++YELI   +LA  +P  ++  T V +  
Sbjct: 366 NDAKITAHHAIIPT---TEPANLGRMSEQERQVYELIRSHYLAQFLPHHEFDRTEVELEC 422

Query: 424 GDFELRAKGRILKFDGYTRVL---PQQSKPGE-DDVLPEMVQGEALKLIQIDPSQHFTKP 479
           G   L A G+ +   G+  +L   P   +P +   VLP + QG    +  ++     T  
Sbjct: 423 GAERLTAVGKQILVQGWKGLLSDNPDDDEPSQKSQVLPALQQGRQCAVDDVELKSMRTAA 482

Query: 480 PARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLHNRR 522
           P   TE  L+K M                 +  GIG  +T A II  + DRGY+    R 
Sbjct: 483 PKPLTEGDLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLIDRGYLLKKKRA 542

Query: 523 FYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQ 582
             +      + E +  +   + D G TA  E+ LD++  G    +  LD F    +  + 
Sbjct: 543 LTASAAAHTLIEAVPAA---VADPGMTAIWEQALDEIEAG----RLTLDTFVAKQAHWIT 595

Query: 583 TAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVP 642
              S+   +  + P      C  C   M+ R   +G F  CS Y       CK TV +  
Sbjct: 596 QLISNCGALTLSVPVEAGPVCPLCNASMLRRKGKSGPFWSCSQY-----PDCKGTVPISK 650

Query: 643 G 643
           G
Sbjct: 651 G 651