Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 648 a.a., DNA topoisomerase III (EC 5.99.1.2) from Pseudomonas fluorescens FW300-N2E2

 Score =  148 bits (374), Expect = 9e-40
 Identities = 146/534 (27%), Positives = 242/534 (45%), Gaps = 65/534 (12%)

Query: 88  KYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYK----RV 143
           K  + P      + ++RL  +A  + +ATD DREGE IA  L E       RY+    R+
Sbjct: 72  KMTVKPKTASQYKAVKRLLGEAKELVIATDADREGEMIARELVE-----HCRYRGPIRRL 126

Query: 144 VFNEITKKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG----- 196
             + + + +I++A +  +PG    +  ++   R   D ++G  +S L      +      
Sbjct: 127 WLSALDEASIRKALAALKPGAETFNLYHSALGRSRADWLIGMNMSRLFTLLGRQSGYQGV 186

Query: 197 LSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADL---GTAKNAKVRFEVAREKGEAFK 253
           L  GRVQ+  ++LVV+R+R I  F+P  YW I   L   G A  A+ R +      +  +
Sbjct: 187 LPVGRVQTPTLRLVVDRDRSIADFVPVAYWAIDVQLSHEGMAFTAQWRAD-PDACDDQER 245

Query: 254 PLNEAQAMAALEKLK--ASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTM 311
            LN+A A  A + ++  A++ ++  R +R   + P  PF   TLQ+  S +LG G ++T+
Sbjct: 246 CLNQALARDAAQAMRNAATARTLKVRTERLREAAP-LPFDLGTLQEVCSKKLGLGAQETL 304

Query: 312 MMAQRLYEA-GYITYMRTD------STNLSADALDMARSYIEREFG--KQYLPEAPLVYG 362
            +AQ LYE    ITY R+D      S +  A A+  A +  +      +++L        
Sbjct: 305 DIAQSLYETYKLITYPRSDCGFLPLSQHSEAPAILAALAQADPSLAPLREHLQPQRKSRA 364

Query: 363 SKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVA 422
             +    AH  I P+    +  KL+G +R    +Y LI  ++LA  +P  +Y  T     
Sbjct: 365 WNDAKVSAHHGIIPTAAAKNLDKLAGKQR---AVYTLIRARYLAQFLPNHEYDRTQADFD 421

Query: 423 AGDFELRAKGRILKFDGYTRVLPQQSKPGE------DDVLPEMVQGEALKLIQIDPSQHF 476
                LRA G+ +   G+ R LP+   P +         LP + +G    + ++ P   +
Sbjct: 422 CAGQALRAVGKQIVEPGWKRALPEALAPAKGREAPAPQTLPALAEGRDCTVDEVKPKDLW 481

Query: 477 TKPPARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLH 519
           T+PP  FTE  L+K M                 +  GIG  +T A+II  + DRGY+  +
Sbjct: 482 TQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKDTTGIGTEATRASIIQGLLDRGYLVKN 541

Query: 520 NRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEF 573
            +   +      + + +  +   + D G TA  E+ LD V  GE      L+EF
Sbjct: 542 GKALSATPAAFSLIDAVPRA---IADPGTTAIWEQALDMVQSGEMS----LEEF 588