Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 516 a.a., DNA topoisomerase III (EC 5.99.1.2) in PFGI-1-like cluster from Pseudomonas fluorescens FW300-N2E2

 Score =  124 bits (312), Expect = 1e-32
 Identities = 114/370 (30%), Positives = 181/370 (48%), Gaps = 27/370 (7%)

Query: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPG 161
           +++L      + +ATD DREGE IA  + E      +  +R+  + +   +I++A SQ  
Sbjct: 109 VKQLLAQTSELVIATDADREGEMIAREVLELCQYRGS-IQRLWLSALNDASIRKALSQLR 167

Query: 162 ELDIDR--VNAQQARRFLDRVVGYMVSPLLW-----AKIARGLSAGRVQSVAVKLVVERE 214
           + +  +   ++  AR   D ++G  +S L       A +   LS GRVQ+  ++LVV+R+
Sbjct: 168 QAEETQSLYHSALARSRADWLIGMNMSRLFTLLGRQAGLNGVLSVGRVQTPTLRLVVDRD 227

Query: 215 REIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKG--EAFKPLNEAQAMAALEKLKASSY 272
           REI  F+P  YW I   L     A      A +    EA + + +A A+ A +  KA+  
Sbjct: 228 REIERFVPRPYWVIQVKLEVLGQAFTAQWAAPDSATDEAGRCIRQAIALQAQQSFKATGV 287

Query: 273 S-VVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDS 330
           + V++ E + T   P  PF  +TLQ+  S RLG+GV++T+ +AQ LYE     TY RTDS
Sbjct: 288 AQVLEVETQRTREAPPLPFDLNTLQEVCSRRLGYGVQETLDIAQSLYETHKATTYPRTDS 347

Query: 331 TNLSADALDMARSYIEREFGKQYLPEAPLVYGS---------KEGAQEAHEAIRPSDVNT 381
             L    L  A + +     K      PLV             +    AH  I P+    
Sbjct: 348 GYLPESMLLEAEA-VFAALIKSDPGVGPLVQSVDFTLRSRAWNDSQVSAHHGIIPT---L 403

Query: 382 HP-TKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGY 440
            P  +L+  ER+   +YELI  ++LA  +PP +Y  T+V +  G+  L+A G+ +   G+
Sbjct: 404 EPFDRLALSEREC-AVYELIRARYLAQFLPPHEYDRTAVQLTCGNHVLKAHGKHVVESGW 462

Query: 441 TRVLPQQSKP 450
            RVL  +  P
Sbjct: 463 HRVLGSECPP 472