Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 655 a.a., DNA topoisomerase III from Pseudomonas fluorescens FW300-N2C3

 Score =  164 bits (415), Expect = 2e-44
 Identities = 156/589 (26%), Positives = 251/589 (42%), Gaps = 56/589 (9%)

Query: 90  EILPGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEIT 149
           E+ P        ++RL  +A T+ +ATD DREGE IA  L E         +R+  + + 
Sbjct: 74  EVKPKTAAQFNVIKRLLSEARTVVIATDADREGEMIARELLELCNYRGP-VQRLWLSALN 132

Query: 150 KKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRV 202
           + +I++A S  + G+      ++  AR   D ++G  +S L      R      LS GRV
Sbjct: 133 EASIRKALSSLKSGQETFPLYHSALARSRADWLIGMNLSRLFTLLGRRAGYEGVLSVGRV 192

Query: 203 QSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKG--EAFKPLNEAQA 260
           Q+  ++LVV+R+R I +F+ E YWE+   L +     +   +    G  EA + L +A A
Sbjct: 193 QTPTLRLVVDRDRAIASFVSEPYWEVDVHLSSMGQPFIASWLPPSSGSDEAGRCLEQALA 252

Query: 261 MAALEKLKAS-SYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYE 319
              +E + +S + +V+  +       P  PF  STLQ+  S +LG GV++T+ +AQ LYE
Sbjct: 253 SQTVEAIFSSKTATVLSLQTEHFREAPPLPFDLSTLQEVCSRKLGLGVQETLNIAQALYE 312

Query: 320 AGYIT-YMRTDSTNLSADALDMARSYIEREF--------GKQYLPEAPLVYGSKEGAQEA 370
               T Y R+D   L     +   +  +           G + L ++       +    A
Sbjct: 313 THKATSYPRSDCRYLPESMFNEVPTVFDALLKTDPALRPGLRSLDQSLHSRVWNDAKVTA 372

Query: 371 HEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRA 430
           H AI P+   + P  L+ M     ++YELI   +L   +P  ++  T V +  G+  L A
Sbjct: 373 HHAIIPT---SEPANLARMSEQERQVYELIRSHYLVQFLPHHEFDRTHVELECGEERLTA 429

Query: 431 KGRILKFDGYTRVLPQQSKPGED----DVLPEMVQGEALKLIQIDPSQHFTKPPARFTEA 486
            G+ +   G+  +L + ++  E      VLP + QG    +  ++     T  P   TE 
Sbjct: 430 VGKQILVQGWKGLLYENTEEDESHQKAQVLPVLQQGTQCAVDHVELKPMRTAAPKSLTEG 489

Query: 487 SLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMG 529
            L+K M                 +  GIG  +T A II  + DRGY+    R   +    
Sbjct: 490 DLIKAMKNVAKLVNDPRLKQKLRDTTGIGTEATRAGIIKGLIDRGYLLKKKRALIASAAA 549

Query: 530 DIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSED 589
             + E +  +   + D G TA  E+ LD++  G       LD F       +    +S  
Sbjct: 550 HTLIESVPVA---VTDPGMTAIWEQALDEIEAGRLS----LDAFVAKQVNWIAQLVASCG 602

Query: 590 GMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATV 638
            +    P      C  C   M+ R   +G F  CS Y       CK TV
Sbjct: 603 SLTLAMPIEAGPVCPICDASMLRRKGKSGPFWSCSHY-----PDCKGTV 646



 Score = 26.9 bits (58), Expect = 0.004
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 714 CDKCGSEMQLKTGRFGKFFGCTN-PACKNTRKLLK 747
           C  C + M  + G+ G F+ C++ P CK T  + K
Sbjct: 616 CPICDASMLRRKGKSGPFWSCSHYPDCKGTVPIRK 650