Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 867 a.a., DNA topoisomerase I, bacterial from Pseudomonas stutzeri RCH2

 Score = 1568 bits (4060), Expect = 0.0
 Identities = 774/870 (88%), Positives = 824/870 (94%), Gaps = 4/870 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAG-E 59
           MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSA+  KEP  KRGKAA  E
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSAN--KEPV-KRGKAAAAE 57

Query: 60  APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD 119
           AP LSPKEKA+RQL+ RMGVDP+HGWKAKYEILPGKEKVIEELRRLAK+ADTIYLATDLD
Sbjct: 58  APVLSPKEKAKRQLITRMGVDPEHGWKAKYEILPGKEKVIEELRRLAKEADTIYLATDLD 117

Query: 120 REGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179
           REGEAIAWHLRE+IGGDD+RYKRVVFNEITKKAIQEAFS+PG+LD++RVNAQQARRFLDR
Sbjct: 118 REGEAIAWHLRESIGGDDSRYKRVVFNEITKKAIQEAFSKPGDLDLNRVNAQQARRFLDR 177

Query: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239
           VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAF+PEEYWE+HADL +A+ AK
Sbjct: 178 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFVPEEYWEVHADLASAQQAK 237

Query: 240 VRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAA 299
           VRFEVARE GEAFKPLNEAQA AALEKLK + YSV KRED+PTSSKPSAPFITSTLQQAA
Sbjct: 238 VRFEVARENGEAFKPLNEAQANAALEKLKGAKYSVSKREDKPTSSKPSAPFITSTLQQAA 297

Query: 300 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPL 359
           SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADA+ M R +IE EFG +YLPE P 
Sbjct: 298 SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAIGMVRGFIEGEFGDKYLPEKPN 357

Query: 360 VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV 419
           VY SKEGAQEAHEAIRPSDVN  PT+LSGMERDAERLYELIWRQF+ACQMPPAQYLSTSV
Sbjct: 358 VYSSKEGAQEAHEAIRPSDVNLRPTQLSGMERDAERLYELIWRQFVACQMPPAQYLSTSV 417

Query: 420 TVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKP 479
           TVAAGDFELRAKGRILKFDGYT+V+PQQSK GEDDVLPEM +G+ +KL+++DPSQHFTKP
Sbjct: 418 TVAAGDFELRAKGRILKFDGYTKVMPQQSKAGEDDVLPEMNKGDDMKLLKLDPSQHFTKP 477

Query: 480 PARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES 539
           PAR++EASLVKEMEKRGIGRPSTYAAIISTIQDRGYV+LHNRRFYSEKMGDIVTERLSES
Sbjct: 478 PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVSLHNRRFYSEKMGDIVTERLSES 537

Query: 540 FSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMT 599
           F+NLMDYGFTA MEE+LDDVAQGERDWK+VLDEFYGDF KKL+ AE+SE+GMRANQPT+T
Sbjct: 538 FNNLMDYGFTAGMEEHLDDVAQGERDWKHVLDEFYGDFRKKLEVAEASENGMRANQPTLT 597

Query: 600 NIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL 659
           +IPCK CGRPMMIRTASTGVFLGCSGYSLPPKERCK+TVNLVPGDEIAADDEGESESRVL
Sbjct: 598 DIPCKVCGRPMMIRTASTGVFLGCSGYSLPPKERCKSTVNLVPGDEIAADDEGESESRVL 657

Query: 660 LGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDKCGS 719
           LGKHRCPIC+TAMDAYLLDE  KLHICGNNPDC GYEIE+G YRIKGYEGPSLECDKCGS
Sbjct: 658 LGKHRCPICSTAMDAYLLDETQKLHICGNNPDCSGYEIEKGQYRIKGYEGPSLECDKCGS 717

Query: 720 EMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGA 779
           EMQLKTGRFGKFFGCTN  CKNTRKLLK+GEAAPPKMD V MPELKCEKVDDTYVLRDGA
Sbjct: 718 EMQLKTGRFGKFFGCTNAECKNTRKLLKNGEAAPPKMDAVKMPELKCEKVDDTYVLRDGA 777

Query: 780 SGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRYSRKTK 839
           SGLFLAASQFPKNRETRAPLV E++PHK EIDPKYHFL DAPQKDP+GR AVIR+SRKTK
Sbjct: 778 SGLFLAASQFPKNRETRAPLVRELIPHKDEIDPKYHFLLDAPQKDPEGRFAVIRFSRKTK 837

Query: 840 EQYVQSEVDGKPTGWKAFYDGNAWKVEDKR 869
           EQYVQ+EVDGKPTGWKAFYDG  WKVEDKR
Sbjct: 838 EQYVQTEVDGKPTGWKAFYDGGKWKVEDKR 867