Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 646 a.a., DNA topoisomerase III, bacteria and conjugative plasmid from Pseudomonas stutzeri RCH2

 Score =  139 bits (351), Expect = 4e-37
 Identities = 150/554 (27%), Positives = 241/554 (43%), Gaps = 67/554 (12%)

Query: 60  APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD 119
           AP  +   + +R ++A + + P+  WK    + P      + ++RL  +   + +ATD D
Sbjct: 47  APPDAYDPRYKRWVLADLPIVPER-WKML--VKPKTASQFKAVKRLLGECSELVIATDAD 103

Query: 120 REGEAIAWHLREAIGGDDTRYK----RVVFNEITKKAIQEAFS--QPGELDIDRVNAQQA 173
           REGE IA  L E       RY+    R+  + +   +I++A +  +PG    +  +A   
Sbjct: 104 REGEMIARELVE-----HCRYRGPIRRLWLSALDDASIRKALAALKPGAETFNLYHAALG 158

Query: 174 RRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFIPEEYWEI 228
           R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  FIP  +W I
Sbjct: 159 RSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIADFIPVPFWAI 218

Query: 229 HADL---GTAKNAKVRF--EVAREKGEAFKPLNEAQAMAALEKLK-ASSYSVVKREDRPT 282
              L   GTA  A+ +   +   ++G     L++A+A  A E ++ A+   ++K +    
Sbjct: 219 DVQLLADGTAFTAQWQAPDDYCDDQGRC---LDQARAQQAAEAMRNAACARLLKLKTERQ 275

Query: 283 SSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMA 341
                 PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L       A
Sbjct: 276 REAAPLPFDLGTLQEVCSKKLGLGAQETLDIAQALYETHKLITYPRSDCGYLPLSQHGEA 335

Query: 342 RSYIEREFGKQ-----YLPEAPLVYGSK---EGAQEAHEAIRPSDVNTHPTKLSGMERDA 393
           R+ +              P   L   S+   +    AH  I P+       +LSG  R  
Sbjct: 336 RAIVAALAQSDPTLAALEPHLDLSRRSRAWNDAKVGAHHGIIPTAAVRGLERLSGRPR-- 393

Query: 394 ERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGED 453
             +YELI  ++LA  +P  +Y  T          LRA G+ +   G+ R +P+   P   
Sbjct: 394 -AVYELIRARYLAQFLPNHEYDRTQADFDCAGQALRAVGKRIVEPGWKRAMPEALAPARG 452

Query: 454 D-------VLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEM-------------- 492
           +        LP + QG+   + +I+     T PP  FTE  L+K M              
Sbjct: 453 NREAPAPQSLPTLQQGQDYAVGEINLKDQQTHPPKPFTEGDLIKAMKNVAKLVDDPRLKQ 512

Query: 493 ---EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFT 549
              +  GIG  +T A II  + DRGY+    +   +      + + +      + D G T
Sbjct: 513 KLKDTTGIGTEATRAGIIQGLLDRGYLLRQGKALAATPAAFSLIDAVPRP---IADPGTT 569

Query: 550 ADMEENLDDVAQGE 563
           A  E+ LD V  GE
Sbjct: 570 AIWEQALDMVQSGE 583