Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 959 a.a., DNA topoisomerase I from Azospirillum brasilense Sp245

 Score =  456 bits (1174), Expect = e-132
 Identities = 283/698 (40%), Positives = 391/698 (56%), Gaps = 89/698 (12%)

Query: 2   GKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAP 61
           G ++VIVESPAKAKTINKYLG+ Y V +S GH+RDLP    +                  
Sbjct: 3   GSNVVIVESPAKAKTINKYLGSDYTVVASFGHVRDLPARDGS------------------ 44

Query: 62  ALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDRE 121
                            V PD  +   +E+    ++ I+E+ +  K A+ +YLATD DRE
Sbjct: 45  -----------------VRPDEDFAMDWELGDRSKRHIDEIAKAVKGAERVYLATDPDRE 87

Query: 122 GEAIAWHLREAIGG----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFL 177
           GEAIAWHL E +      DD++ +R+ FNEITK A+Q A   P ++  + V+A  ARR L
Sbjct: 88  GEAIAWHLSELLREKRLIDDSKVQRITFNEITKSAVQAALEAPRDVSRELVDAYLARRAL 147

Query: 178 DRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKN 237
           D +VG+ +SP+LW K+    SAGRVQSVA++L+ ERE EI  F P+EYW I     T   
Sbjct: 148 DYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICERESEIEVFKPQEYWTIEVGFATPGG 207

Query: 238 AKVRFEVAREKGEAFK----PLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITS 293
           A    ++ +  G+       P  EA A AA+ ++   ++SV   E + +   PS PF TS
Sbjct: 208 ASFTAQLTQLDGKRLDKFALPAREA-AEAAVARISPQAFSVATVERKQSRRNPSPPFTTS 266

Query: 294 TLQQAASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARSYI 345
           TLQQ AS +LGFG  +TM  AQRLYE         G ITYMRTD  +LS +A++ AR+ I
Sbjct: 267 TLQQEASRKLGFGATRTMRTAQRLYEGVDIGGETVGLITYMRTDGVSLSQEAIEGARNLI 326

Query: 346 EREFGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIWRQ 403
              +G++Y+P  P VY +  + AQEAHEAIRP+D+   P ++S  +E D  RLYELIW++
Sbjct: 327 GSHWGERYVPAQPRVYKTAAKNAQEAHEAIRPTDLFRRPEEVSSYLEGDELRLYELIWKR 386

Query: 404 FLACQMPPAQYLSTSVTVAAG--DFELRAKGRILKFDGYTRVLPQQSKPG--EDDV---L 456
            LA QM  A     +V +A+   D  LRA G ++ FDG+ +V  +    G  +DD    L
Sbjct: 387 TLASQMESAVLDQVAVDIASPSKDVVLRATGSVVVFDGFLKVYQEDRDDGAADDDQERRL 446

Query: 457 PEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYV 516
           P M QG+AL    I P QHFT+PP R+TEASLVK++E+ GIGRPSTYA+I+  +QDR YV
Sbjct: 447 PAMEQGDALARGDISPEQHFTQPPPRYTEASLVKKLEELGIGRPSTYASILQVLQDRNYV 506

Query: 517 TLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGD 576
            L  RRF  E  G +VT  L   F+  ++Y FTAD+E  LD+++ G  DWK VL +F+  
Sbjct: 507 RLDKRRFIPEDRGRLVTAFLKNFFNRYVEYNFTADLENKLDEISDGRIDWKTVLRDFWRA 566

Query: 577 FS-----------KKLQTAESSEDG-----MRANQPTMTNIP--CKECGRPMM-IRTAST 617
           F             ++ T    E G       AN  +  + P  C  C +  + ++    
Sbjct: 567 FHVAVDGTKDLTITQVLTTLDEELGPHFFPTNANSDSPGHDPRVCPVCSQGRLGLKLGKM 626

Query: 618 GVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESE 655
           G F+GCS Y       C+ T  L     +A D+ GE++
Sbjct: 627 GAFIGCSRY-----PDCRYTRPLA----VANDENGEAQ 655



 Score = 28.9 bits (63), Expect = 0.002
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 6/56 (10%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKLL----KSGEAAPPKMDKVDMPE 763
           C  C    + LK G+ G F GC+  P C+ TR L     ++GEA     +  + PE
Sbjct: 611 CPVCSQGRLGLKLGKMGAFIGCSRYPDCRYTRPLAVANDENGEAQEGPRELGNDPE 666