Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 831 a.a., DNA topoisomerase I (EC 5.99.1.2) from Xanthomonas campestris pv. campestris strain 8004

 Score =  443 bits (1139), Expect = e-128
 Identities = 270/617 (43%), Positives = 371/617 (60%), Gaps = 64/617 (10%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M K L+IVESPAKAKTINKYLG  + V +S GH+RDL                       
Sbjct: 1   MPKHLLIVESPAKAKTINKYLGKDFTVLASYGHVRDLV---------------------- 38

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
               PKE A         VDPD+G+  +Y+++   EK +E + R AK AD IYLATD DR
Sbjct: 39  ----PKEGA---------VDPDNGFAMRYDLIEKNEKHVEAIARAAKSADDIYLATDPDR 85

Query: 121 EGEAIAWHLREAIGG----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRF 176
           EGEAI+WH+ E +       D   +RVVF EIT +AI+EA  +P  +  D V+AQQARR 
Sbjct: 86  EGEAISWHIAEILKERGLLKDKTMQRVVFTEITPRAIKEAMLKPRAIAADLVDAQQARRA 145

Query: 177 LDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAK 236
           LD +VG+ +SP+LW K+ RGLSAGRVQS A++++VERE EI AFI  EYW I A      
Sbjct: 146 LDYLVGFNLSPVLWRKVQRGLSAGRVQSPALRMIVEREEEIEAFIAREYWSIDAHCRHPS 205

Query: 237 ---NAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKRED---RPTSSKPSAPF 290
              NA++  ++  +K E F   +   A AA  +++ ++  V+   D   +    +P+ PF
Sbjct: 206 QPFNARL-IKLDGQKFEQFTVTDGDTAEAARLRIQQAAQGVLHVTDVASKERKRRPAPPF 264

Query: 291 ITSTLQQAASNRLGFGVKKTMMMAQRLYEA---------GYITYMRTDSTNLSADALDMA 341
            TSTLQQ AS +LGF  +KTM +AQ+LYE          G I+YMRTDS NLS DAL   
Sbjct: 265 TTSTLQQEASRKLGFTTRKTMQVAQKLYEGVALGDEGSVGLISYMRTDSVNLSQDALAEI 324

Query: 342 RSYIEREFGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAER-LYEL 399
           R  I R+FG   LP+ P  Y +K + AQEAHEA+RP+     P +++    D ER LYEL
Sbjct: 325 RDVIARDFGTASLPDQPNAYTTKSKNAQEAHEAVRPTSALRTPAQVARFLSDDERRLYEL 384

Query: 400 IWRQFLACQMPPAQYLSTSVTVAAG-DFELRAKGRILKFDGYTRVLPQ--QSKPGEDD-- 454
           IWR+ +ACQM PA   + SV ++AG +   RA G  +   G+  V  +   +K  ED+  
Sbjct: 385 IWRRAVACQMIPATLNTVSVDLSAGSEHVFRASGTTVVVAGFLAVYEEGKDTKSSEDEDE 444

Query: 455 --VLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQD 512
              LP M  G+ + L +I   QHFT+PP RFTEA+LVK +E+ GIGRPSTYA+II T+Q 
Sbjct: 445 GRKLPLMKAGDNIPLDRIVTDQHFTQPPPRFTEAALVKALEEYGIGRPSTYASIIQTLQF 504

Query: 513 RGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDE 572
           R YV +  R F    +G  V++ LS  F+  +DY FTA++E++LD V++GE +W  ++++
Sbjct: 505 RKYVEMEGRSFRPTDVGRAVSKFLSGHFTRYVDYDFTANLEDDLDAVSRGEAEWIPLMEK 564

Query: 573 FYGDFSKKLQTAESSED 589
           F+G F + ++  + S D
Sbjct: 565 FWGPFKELVEDKKDSLD 581