Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 647 a.a., DNA topoisomerase III from Vibrio cholerae E7946 ATCC 55056

 Score =  110 bits (274), Expect = 3e-28
 Identities = 142/533 (26%), Positives = 225/533 (42%), Gaps = 58/533 (10%)

Query: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTR---YKRVVFNEITKKAIQEAFS 158
           +R+L K+A  I  A D DREG+ +   + +      ++    +R++ +++   A++ A  
Sbjct: 89  VRKLLKEATQIIHAGDPDREGQLLVDEVIDYCKVPKSKKETVQRLLISDLNLSAVKRALQ 148

Query: 159 --QPGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 211
             +     I    +  AR   D + G  +S    LL  K      LS GRVQ+  + LVV
Sbjct: 149 GLRSNREFIPLSVSALARSRADWLYGMNMSRAYTLLGKKAGYQGVLSVGRVQTPVLGLVV 208

Query: 212 EREREIRAFIPEEYWEIHADLGTAKNAKVRFEV-AREK-GEAFKPLNEAQAMAALEKLKA 269
            R+ EI  FIP +Y+ + A L   +N    F++ AR K  EA  P  + +      KL  
Sbjct: 209 RRDEEIEHFIPHDYFTLDA-LIPYQNGTEYFDIRARWKPSEACLPWQDEEGRVTNRKLVD 267

Query: 270 SSYS--------VVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA- 320
           +  S        V + E   T      P+  S LQ  A+ R  F  ++ + + Q LYE  
Sbjct: 268 NVASRIANQPATVTESEQDQTKQAAPLPYSLSALQIDAAKRYNFSAQQVLDLCQSLYEKH 327

Query: 321 GYITYMRTDSTNLSADALDMARSYIEREFGKQY-----LPEAPLVYGSK---EGAQEAHE 372
             ITY R+D   L  + L  A   +             + +A L   SK   +   +AH 
Sbjct: 328 KLITYPRSDCRYLPKEHLAQAPDVVAAIANNAQEMVTAVNDADLSLRSKAWNDSKVDAHH 387

Query: 373 AIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV--TVAAGDFELRA 430
           AI P+        LSG E    ++Y+LI RQ+L    P A Y    +   +A G F   A
Sbjct: 388 AIIPTPKKASVNALSGHEM---KVYQLIARQYLMQFYPAAIYAEAKLVFNIAGGIF--IA 442

Query: 431 KGRILKFDGYTRVLPQQSKPGE-DDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLV 489
           KGR L   G+  +  QQ +  E  D +P +  G  L+  + +  Q  T+PP  FTEA+L+
Sbjct: 443 KGRQLLSAGWKVLTGQQDEQEECVDKVPPLPVGIVLQCREGEIKQRQTEPPRHFTEATLL 502

Query: 490 KEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIV 532
           + M                 E  G+G  +T A I+ T+  RG +   N+   S   G  +
Sbjct: 503 QAMTGIARFVADKELKKILRETDGLGTEATRAGILDTLFKRGLLQRDNKLIKSTPAGRGL 562

Query: 533 TERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAE 585
              L    S       TA  E  L  +A+  + ++  +    G   + ++  +
Sbjct: 563 IHALP---SEATYPDMTAHWEHQLQAIAEKGQAYQPFMQTLQGRLEQLIEQVQ 612