Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 656 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

 Score =  136 bits (342), Expect = 5e-36
 Identities = 152/579 (26%), Positives = 247/579 (42%), Gaps = 64/579 (11%)

Query: 60  APALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLD 119
           AP  +   + +R ++  + + P+   K K  + P      + ++RL  +A  + +ATD D
Sbjct: 47  APPDAYDARYKRWVLEDLPIVPE---KWKMLVKPRTASQFKAVKRLLGEATELVIATDAD 103

Query: 120 REGEAIAWHLREAIGGDDTRYK----RVVFNEITKKAIQEAFS--QPGELDIDRVNAQQA 173
           REGE IA   RE I  +  RY+    R+  + +   +I++A +  +PG       ++   
Sbjct: 104 REGEMIA---RELI--EHCRYRGPIQRLWLSALDDASIRKALAALKPGADTFSLYHSALG 158

Query: 174 RRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFIPEEYWEI 228
           R   D ++G  +S L      +      L  GRVQ+  ++LVV+R+R I  F+P  YW I
Sbjct: 159 RSRADWLIGMNMSRLFTLLGRQSGYQGVLPVGRVQTPTLRLVVDRDRSIANFVPAPYWAI 218

Query: 229 HADLGTAKNAKVRFEVAREKG--EAFKPLNEAQAMAALEKLK-ASSYSVVKREDRPTSSK 285
              L     A +    A      +  + LN+A A  A + ++ A+S  +VK         
Sbjct: 219 DVRLLHDNQAFIAQWRAPSDACDDQDRCLNQALAQQAAQAMRAAASARLVKLRTERIREA 278

Query: 286 PSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTNL----SADALDM 340
              PF   TLQ+  S +LG G ++T+ +AQ LYE    ITY R+D   L      +A  +
Sbjct: 279 APLPFDLGTLQEICSKKLGLGAQETLDIAQSLYETHKVITYPRSDCGYLPNSQHGEAAGI 338

Query: 341 ARSYIEREFG----KQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERL 396
             +  + +        +L          +    AH  I P+       +LSG  R    +
Sbjct: 339 IAALCKADPALANLSPHLDPQRRSRAWNDSKVTAHHGIIPTAAVRGVERLSGKPR---AV 395

Query: 397 YELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGE---- 452
           Y LI  ++LA  +P  +Y  T          LRA G+ +   G+ R +P+   P +    
Sbjct: 396 YTLIRARYLAQFLPNHEYDRTQADFDCAGHALRAVGKQIVEPGWKRAMPEALAPAKGREA 455

Query: 453 --DDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEM-----------------E 493
                LP + QG    + ++     +T+PP  FTE  L+K M                 +
Sbjct: 456 PAPQPLPALFQGCECAVAEVILKDLWTQPPKPFTEGDLIKAMKNVAKLVEDPLLKQKLKD 515

Query: 494 KRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADME 553
             GIG  +T A II  + DRGY+T   +   +      + + +  +   + D G TA  E
Sbjct: 516 TTGIGTEATRAGIIQGLLDRGYLTKQGKSLCAAPAAFSLIDAVPRA---IADPGTTAIWE 572

Query: 554 ENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMR 592
           + LD V  GE      L+EF    +  +    S   GMR
Sbjct: 573 QALDMVQSGEMS----LEEFVAKQAAWMSKQVSRCVGMR 607