Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 673 a.a., DNA topoisomerase III from Pseudomonas syringae pv. syringae B728a

 Score =  158 bits (399), Expect = 1e-42
 Identities = 168/605 (27%), Positives = 252/605 (41%), Gaps = 68/605 (11%)

Query: 91  ILPGKEKVIEE---------LRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYK 141
           ILP + KV+ +         +++L K A  + +ATD DREGE IA  L E  G      +
Sbjct: 66  ILPAEWKVLVKPKTASQFKIVKQLLKQATELVIATDADREGEMIARELIEYCGYRGP-IQ 124

Query: 142 RVVFNEITKKAIQEAFS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLW-----AKIA 194
           R+  + + + +I++A +  + G        +  AR   D ++G   S L       A   
Sbjct: 125 RLWLSALNEASIRQALNTVKQGSETYPLYLSALARSRADWLIGMNFSRLFTLLGRQAGYT 184

Query: 195 RGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVARE--KGEAF 252
             LS GRVQ+  ++LVV+R+R+I  FIP+ +W +   L TA  + +   VA E    E  
Sbjct: 185 GVLSVGRVQTPTLRLVVDRDRDISNFIPKPFWSVEVQLWTAGQSFLAKWVADEYLVDEEG 244

Query: 253 KPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPS-APFITSTLQQAASNRLGFGVKKTM 311
           + L++A A AAL  LK+S  +     D      P+  PF  STLQ+  S + G GV++T+
Sbjct: 245 RCLDQAAAAAALAALKSSQAASTVSVDTKRGKDPAPLPFDLSTLQEVCSAKFGMGVQETL 304

Query: 312 MMAQRLYEA-GYITYMRTDSTNLSADALDM------ARSYIEREFGKQYL---PEAPLVY 361
            +AQ LYE     TY RTD   L     D       A +  +   GK      PE     
Sbjct: 305 DVAQSLYETHKATTYPRTDCGYLPESMFDEVPMVLDALNRTDPSIGKTLQLIDPEQRSRA 364

Query: 362 GSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTV 421
            + +     H  I P+     P  LS M     ++YELI   FLA  +P  +Y  T  T 
Sbjct: 365 WNDKKITGPHHGIIPT---LEPANLSAMSEKERKVYELIRAHFLAQFLPTHEYDRTVATF 421

Query: 422 AAGDFELRAKGRILKFDGYTRVLPQQSKP------GEDDVLPEMVQGEALKLIQIDPSQH 475
                 L+A G+ +   G+  +    S+       G   +LP +  G    +  +     
Sbjct: 422 ECNAVLLQAVGKRIVIPGWKVLFSASSEEEANDSGGRSQILPVLQIGTRCDVQDLHLKSL 481

Query: 476 FTKPPARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTL 518
            T+PP  +TE +L+K M                 E  GIG  +T A  I  + DRG +  
Sbjct: 482 KTEPPKAYTEGTLIKAMKTIAKLVKDPRLAQKLKETTGIGTEATRAGTIQGLIDRGSLIK 541

Query: 519 HNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFS 578
                 + +    + + +  +   + D G TA  E+ L  + QG       LD+F    S
Sbjct: 542 KGSALRATEAAFSLIDAVPPA---VADPGTTAIWEQALTMIEQGTL----TLDDFIARQS 594

Query: 579 KKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATV 638
             +        G   +        C  C      R  S+GVF  CS Y       CK TV
Sbjct: 595 SWITRLVEQYKGTTLSIKVPEGPKCPLCSAKTSQRKGSSGVFWACSRY-----PECKGTV 649

Query: 639 NLVPG 643
           N+  G
Sbjct: 650 NIGTG 654