Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 883 a.a., DNA topoisomerase I from Synechococcus elongatus PCC 7942

 Score =  409 bits (1050), Expect = e-118
 Identities = 258/669 (38%), Positives = 370/669 (55%), Gaps = 62/669 (9%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           LVIVESP KA+TI  YL   Y V++S+GH+RDLP S    AS  P   +G+         
Sbjct: 4   LVIVESPTKARTIRNYLPKDYRVEASMGHVRDLPQS----ASDIPTELKGEKW------- 52

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
                     + +GVD ++ +   Y +   K+K+++ L+   KDAD + LATD DREGE+
Sbjct: 53  ----------SNLGVDVENNFAPLYIVPKDKKKIVKTLKDALKDADELILATDEDREGES 102

Query: 125 IAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRVVGYM 184
           I+WHL + +       KR+VF+EIT++AIQ A     ++D   V+AQ+ RR LDR+VGY 
Sbjct: 103 ISWHLLQLLQ-PRVPTKRMVFHEITQEAIQAALKNCRDVDQRLVHAQETRRILDRLVGYT 161

Query: 185 VSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKN------- 237
           +SPLLW KIA GLSAGRVQSVAV+L+V+RER  RAF    YW++ A L            
Sbjct: 162 LSPLLWKKIAWGLSAGRVQSVAVRLLVQRERARRAFRQGSYWDLKAQLTVEAGQFEAKLW 221

Query: 238 --AKVRFEVARE---------KGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKP 286
             A  R     +          G     L++ +A A  ++L+   + V   E++PT+ KP
Sbjct: 222 TLAGQRLATGNDFDESTGQIIAGRQVCLLDQQEAEALRDRLQTQPWQVKSLEEKPTTRKP 281

Query: 287 SAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIE 346
           + PF TSTLQQ ++ +L    ++TM +AQ LYE G+ITYMRTDS +LS  A++ ARS +E
Sbjct: 282 APPFTTSTLQQESNRKLRLSARETMRVAQSLYERGFITYMRTDSVHLSQQAIEAARSCVE 341

Query: 347 REFGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFL 405
           + +GK YL   P  + +K + AQEAHEAIRP+       + +G+      LY+LIW++ +
Sbjct: 342 QMYGKNYLSPQPRQFTTKSKNAQEAHEAIRPAGNTFRLPQETGLSGAEFALYDLIWKRTI 401

Query: 406 ACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVL------PQQSKPGEDDVLPEM 459
           A QM  A+    SV +   + E RA G+ + F G+ R        P  +    + +LP +
Sbjct: 402 ASQMAEARQTMLSVLLEVDNAEFRASGKRIDFPGFFRAYVEGSDDPDAALEDREILLPAL 461

Query: 460 VQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLH 519
             G+     ++    H T+PPAR+TEASLVK +E  GIGRPSTYA+II TI DRGY  L 
Sbjct: 462 KVGDRPTCQELAAIGHETQPPARYTEASLVKMLENEGIGRPSTYASIIGTIVDRGYAQLV 521

Query: 520 NRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFY-GD-- 576
           +           VT  L + F +L+D  F+A ME++LDD++ GE DW   L +FY GD  
Sbjct: 522 SNTLTPTFTAFAVTALLEQHFPDLVDTSFSARMEQSLDDISNGEVDWLPYLSQFYRGDRG 581

Query: 577 FSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLP-----PK 631
             ++++  ES  D   A    +  +P K       +R    G +L       P     PK
Sbjct: 582 LEEQVKLRESEIDPAAARTVALEGLPAK-------VRIGRFGAYLEAEADGEPIKANLPK 634

Query: 632 ERCKATVNL 640
           E   A +++
Sbjct: 635 ELTPADLDV 643