Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 900 a.a., DNA topoisomerase I from Sinorhizobium meliloti 1021

 Score =  432 bits (1111), Expect = e-125
 Identities = 267/708 (37%), Positives = 389/708 (54%), Gaps = 107/708 (15%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M  ++V+VESP+KAKTINKYLG  Y V +S GH+RDLP            AK G      
Sbjct: 5   MSMNVVVVESPSKAKTINKYLGPGYKVLASFGHVRDLP------------AKDGS----- 47

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
                             V PD  ++  +E+     K ++++    K +D + LATD DR
Sbjct: 48  ------------------VRPDEDFEMSWEVDGASAKRMKDIADAVKSSDGLILATDPDR 89

Query: 121 EGEAIAWHL------REAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQAR 174
           EGEAI+WH+      ++ IG  D   KRVVFN ITKKA+ +A ++P ++D   V+A  AR
Sbjct: 90  EGEAISWHVLDLLRKKKVIG--DKPVKRVVFNAITKKAVLDAMAEPRDIDASLVDAYLAR 147

Query: 175 RFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGT 234
           R LD +VG+ +SP+LW K+    SAGRVQSVA++LV +RE EI  F+ EEYW I A L T
Sbjct: 148 RALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVCDREAEIERFVTEEYWNISALLKT 207

Query: 235 AKNAKVRFEVAREKGEAFKPL---NEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFI 291
            +  +    +    G+   P    N  +A      L  +SY V   E +P    PS PF 
Sbjct: 208 PRGDEFEARLVSADGKRLPPKAIGNGEEANRLKSLLDGASYVVESVEAKPVKRNPSPPFT 267

Query: 292 TSTLQQAASNRLGFGVKKTMMMAQRLYEA--------GYITYMRTDSTNLSADALDMARS 343
           TSTLQQAAS++LGF   +TM +AQ+LYE         G ITYMRTD   ++ +A++ AR 
Sbjct: 268 TSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETVGLITYMRTDGVQMAPEAIEAARQ 327

Query: 344 YIEREFGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSG-MERDAERLYELIW 401
            I  +FG++YLPE P  Y +K + AQEAHEAIRP+D +  P ++   ++ D  RLY+L+W
Sbjct: 328 AIGSQFGERYLPEKPRFYSTKAKNAQEAHEAIRPTDFDRTPDQVRRFLDGDMLRLYDLVW 387

Query: 402 RQFLACQMPPAQYLSTSVTVAAGDFE----LRAKGRILKFDGYTRVLPQQSKPGE----- 452
           ++ +A QM  A+   T+  + A +      LRA G +++FDG+        + GE     
Sbjct: 388 KRGIASQMASAEIERTTAEIVADNAGKKAGLRATGSVIRFDGFIAAYTDMKEDGEQADDG 447

Query: 453 --DDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTI 510
             D  LPE+   E L   +I+ SQHFT+PP R++EA+L+K+ME+ GIGRPSTYAA ++T+
Sbjct: 448 DEDGRLPEINARENLAKQKINASQHFTEPPPRYSEATLIKKMEELGIGRPSTYAATVTTL 507

Query: 511 QDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVL 570
            DR YV +  R+   +  G +VT  L   F+  ++Y FTA +EE LD ++ GE +WK+VL
Sbjct: 508 IDRDYVEIDKRKLVPQAKGRLVTAFLESFFTRYVEYDFTASLEEKLDQISAGELNWKDVL 567

Query: 571 DEFYGDFSKKLQTAE---------------------SSEDGMRANQPTMTNIPCKECGR- 608
            +F+ DF  +++  +                       EDG     P +    C+ CG  
Sbjct: 568 RDFWKDFFSQIEDTKELRVTNVLDALNEELAPLVFPKREDG---GDPRI----CQVCGTG 620

Query: 609 PMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESES 656
            + ++    G F+GCS Y       C  T       ++++D  G++E+
Sbjct: 621 KLSLKLGKYGAFVGCSNY-----PECNYT------RQLSSDSNGDAEA 657



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 16/34 (47%), Positives = 23/34 (67%), Gaps = 2/34 (5%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKL 745
           C  CG+ ++ LK G++G F GC+N P C  TR+L
Sbjct: 614 CQVCGTGKLSLKLGKYGAFVGCSNYPECNYTRQL 647