Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 911 a.a., type I DNA topoisomerase from Rhodopseudomonas palustris CGA009

 Score =  440 bits (1132), Expect = e-127
 Identities = 275/703 (39%), Positives = 387/703 (55%), Gaps = 101/703 (14%)

Query: 4   SLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPAL 63
           +LVIVESPAKAKTINKYLG+ Y V +S GH+RDLP            AK G         
Sbjct: 2   NLVIVESPAKAKTINKYLGSSYEVLASFGHVRDLP------------AKNG--------- 40

Query: 64  SPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGE 123
                          VDPD  ++  +E+ P     + ++ +  K AD + LATD DREGE
Sbjct: 41  --------------SVDPDADFQMIWEVDPKAASRLNDIAKALKGADKLILATDPDREGE 86

Query: 124 AIAWHLREAI----GGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179
           AI+WH+ E +       D + +RVVFN ITK+++ +A   P ++D   V+A  ARR LD 
Sbjct: 87  AISWHVLEVMKQKRALKDQQVERVVFNAITKQSVTDAMKHPRQIDGALVDAYMARRALDY 146

Query: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239
           +VG+ +SP+LW K+    SAGRVQSVA++LV +RE EI  F+P EYW + A + T +   
Sbjct: 147 LVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDRETEIEKFVPREYWSLIATMATPRGET 206

Query: 240 VRFEVAREKGEAFKPLN---EAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQ 296
               +    G+  + L+    A+A    + ++A+++ V   E +P    P APF TSTLQ
Sbjct: 207 FEARLVGADGKKIQRLDIGTGAEAEDFKKAIEAANFRVATVEAKPARRNPYAPFTTSTLQ 266

Query: 297 QAASNRLGFGVKKTMMMAQRLYE--------AGYITYMRTDSTNLSADALDMARSYIERE 348
           Q AS +LGF    TM +AQRLYE         G ITYMRTD   + + A+  AR  I  +
Sbjct: 267 QEASRKLGFAPAHTMRVAQRLYEGVDIGGETVGLITYMRTDGVQIDSSAITQARKVIAED 326

Query: 349 FGKQYLPEAPLVYGSK-EGAQEAHEAIRPSDVNTHPTKLS-GMERDAERLYELIWRQFLA 406
           FG  Y+P+AP  Y +K + AQEAHEAIRP+D++  P+ +S  ++ D  RLYELIW + +A
Sbjct: 327 FGNAYVPDAPRQYTAKAKNAQEAHEAIRPTDLSRRPSDVSRNLDSDQARLYELIWIRTVA 386

Query: 407 CQMPPAQYLSTSVTVAAGD----FELRAKGRILKFDGYTRVLPQQSKPGEDDV----LPE 458
            QM  A+   T+V + A       ELRA G+++KFDG+     +      +D     LP 
Sbjct: 387 SQMESAELERTTVDIEAKAGSRVLELRATGQVVKFDGFLAAYQEGRDDDSEDEDSRRLPA 446

Query: 459 MVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTL 518
           M + EALK   +  +QHFT+PP RF+EASLVK ME+ GIGRPSTYA+I+  ++DRGYV L
Sbjct: 447 MSENEALKREALAVTQHFTEPPPRFSEASLVKRMEELGIGRPSTYASILQVLKDRGYVRL 506

Query: 519 HNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDF- 577
             +R + E  G +V   L   F+  ++Y FTA +EE+LD ++  E  WK VL +F+ DF 
Sbjct: 507 EKKRLHGEDKGRVVVAFLESFFTRYVEYDFTAGLEEDLDRISNNEVSWKQVLSDFWRDFI 566

Query: 578 -----SKKLQTAE---------------SSEDGMRANQPTMTNIPCKECGR-PMMIRTAS 616
                 K L+ A+               + EDG    Q       C  CG   + ++   
Sbjct: 567 GAVDEIKDLRVAQVLDVLDEMLGPHIYPAREDGGDPRQ-------CPSCGTGKLNLKAGK 619

Query: 617 TGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL 659
            G F+GCS Y       C+ T        +A+D  G+++ RVL
Sbjct: 620 FGAFVGCSNY-----PECRYT------RPLASDSAGDAD-RVL 650



 Score = 39.3 bits (90), Expect = 1e-06
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 709 GPSLECDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKL 745
           G   +C  CG+ ++ LK G+FG F GC+N P C+ TR L
Sbjct: 600 GDPRQCPSCGTGKLNLKAGKFGAFVGCSNYPECRYTRPL 638