Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 900 a.a., DNA topoisomerase TopA from Phaeobacter inhibens DSM 17395

 Score =  453 bits (1165), Expect = e-131
 Identities = 275/678 (40%), Positives = 387/678 (57%), Gaps = 97/678 (14%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           +V+VESPAKAKTINKYLG+ Y V +S GH+RDLP            AK G          
Sbjct: 3   VVVVESPAKAKTINKYLGSDYTVLASYGHVRDLP------------AKNGS--------- 41

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
                         V+PD  +   +E+     K ++ +    KD + + LATD DREGEA
Sbjct: 42  --------------VEPDDDFAMTWEVGADSRKHVKAIADALKDDNALILATDPDREGEA 87

Query: 125 IAWHLREAIGG-----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179
           I+WHL+EA+        DT   RV FN ITK+A+ EA   P ++D+  V A  ARR LD 
Sbjct: 88  ISWHLQEALTKRRSIKKDTAVSRVTFNAITKEAVTEAMKNPRQVDLPLVEAYLARRALDY 147

Query: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239
           +VG+ +SP+LW K+    SAGRVQSV ++L+VERE EI AF P+EYW + A L T +  +
Sbjct: 148 LVGFNLSPVLWRKLPGARSAGRVQSVCLRLIVEREMEIEAFKPQEYWSVKASLATPRGQE 207

Query: 240 VRFEVA---REKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQ 296
               +     +K + +   N   A  A++ + + + +V   E +P S  PSAPF+TSTLQ
Sbjct: 208 FEARLTVLGGDKLDKYALANSTAAELAVQAVASRALTVQSVEAKPASRNPSAPFMTSTLQ 267

Query: 297 QAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPE 356
           Q AS + G G K+ M  AQRLYEAGYITYMRTD  +++ +A+  AR+ I   +G +Y+P 
Sbjct: 268 QEASRKFGMGAKQCMNAAQRLYEAGYITYMRTDGIDMAPEAVQEARAEIANRYGAEYVPG 327

Query: 357 APLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
           +P +Y +K + AQEAHE IRP+++      L   E D  +LY+LIW++ LACQM  A+  
Sbjct: 328 SPRIYKNKAKNAQEAHECIRPTEMGRDAKSLKVSEDDQRKLYDLIWKRTLACQMEGARLE 387

Query: 416 STSVTVAAGDFE--LRAKGRILKFDGYTRVLPQQSKPGEDDV-------LPEMVQGEALK 466
            T+V + + D +  LRA G+++ FDG+ RV  +    G DDV       LP+++QGE+LK
Sbjct: 388 RTTVDIGSNDGQVVLRATGQVMLFDGFLRVYEE----GRDDVVDDDDKRLPQIMQGESLK 443

Query: 467 -----------------LIQIDPS----QHFTKPPARFTEASLVKEMEKRGIGRPSTYAA 505
                            ++  D +    QH T+PP RFTEA+LVK ME+ GIGRPSTYA+
Sbjct: 444 FAASLAAQAEKADTGGAILSDDKAVLGLQHHTQPPPRFTEATLVKRMEELGIGRPSTYAS 503

Query: 506 IISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERD 565
           +I+TIQDR YV     R + E  G IVT  L   F   + Y FTA++E  LDDV+ G+RD
Sbjct: 504 VITTIQDREYVRKDKNRLFPEDKGRIVTIFLLNFFRTYVGYEFTANLEGELDDVSAGDRD 563

Query: 566 WKNVLDEFYGDFSKKLQTAESSE----------DGMRANQ---PTMTNIP---CKECGRP 609
           +K++L  F+ DFS  +  +E+S+          D   A Q   P    +    C +CG  
Sbjct: 564 YKDLLSRFWRDFSAAI--SETSDLRITEVLDVLDDALAPQLYPPREDGVDPRVCPKCGAG 621

Query: 610 MM-IRTASTGVFLGCSGY 626
            + ++T+ TG F+GC  Y
Sbjct: 622 QLHLKTSRTGGFVGCGNY 639



 Score = 37.0 bits (84), Expect = 5e-06
 Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 4/41 (9%)

Query: 714 CDKCGS-EMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAA 752
           C KCG+ ++ LKT R G F GC N P C  TR +  SGE A
Sbjct: 615 CPKCGAGQLHLKTSRTGGFVGCGNYPECNYTRPI--SGEGA 653