Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 617 a.a., DNA topoisomerase III from Pedobacter sp. GW460-11-11-14-LB5

 Score =  137 bits (346), Expect = 1e-36
 Identities = 137/538 (25%), Positives = 246/538 (45%), Gaps = 57/538 (10%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKA 152
           P   K ++ +++L  +A  I +ATD  REGE I  ++   +      +KR+  +  T +A
Sbjct: 86  PAVRKQLDTIKKLFDEASEIIVATDAGREGELIFRYIYYYLKCKKP-FKRLWISSQTDEA 144

Query: 153 IQEAFS--QPGELDIDRV-NAQQARRFLDRVVGYMVSPLLWAKIARG----LSAGRVQSV 205
           I++ F   +PG  D D + N+   R   D +VG   +  L   I+ G    LS GRVQ+ 
Sbjct: 145 IKDGFRNLKPGT-DYDTLFNSAHCRSESDWLVGMNATQAL--SISAGNRTVLSLGRVQTP 201

Query: 206 AVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKPLNEAQAMAALE 265
            + ++  R  EI+ F+P+ Y++I   L  +K+ +V   ++      +K   E + + AL 
Sbjct: 202 TLAMICARFLEIKNFVPQTYYQISILL--SKDEQVFKAISTSN---YKEKEEVEKLFALV 256

Query: 266 KLKASSY----SVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAG 321
           +  AS +    ++   E +P    P      S+LQQ A+ + G+   +T+ + Q LYE+ 
Sbjct: 257 EDVASGFPTGGNITAVEAKPRKEPPPLLHDLSSLQQEANKKKGYTADQTLNILQNLYESK 316

Query: 322 YITYMRTDSTNLSADAL----DMARSYIER-EFGK--QYLPEAPLVYGSKEGAQEA-HEA 373
            ++Y RT S  +  D      D+   + +  +FGK  Q+L    L   S    +   H A
Sbjct: 317 LVSYPRTGSRYIGDDVFAGVPDLIAKFTDHPDFGKQAQFLQSITLNKRSVNAKKVTDHHA 376

Query: 374 IRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGR 433
           + P+    +     G+  D + +Y+++  + +           T +T+ +G     A G 
Sbjct: 377 VLPTGEQAY-----GLSADKQAVYDMVVGRMIEAFHQECLKELTKITIQSG-VTFVANGT 430

Query: 434 ILKFDGYTRVL--PQQSKPGEDD-VLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVK 490
           +++  G+  V   P+  K  ED+  LP++  GE L + +    +  TKP   + EASL+K
Sbjct: 431 VIRSAGWRAVFNDPEDDKKDEDNAALPKVAVGEQLAITEKSLLEKQTKPKPMYNEASLLK 490

Query: 491 EME----------------KRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTE 534
            +E                  G+G P+T A+II T+  R Y+T   R       G  V E
Sbjct: 491 ALETCGKEIEDEELRYAMKDSGLGTPATRASIIETLITREYITREKRNLVPTNKGLAVYE 550

Query: 535 RLSESFSNLMDYGFTADMEENLDDVAQGE--RDWKNVLDEFYGDFSKKLQTAESSEDG 590
            + +    +     T   E+ L+++  G   +D+K+ + E+    + +L  A +S  G
Sbjct: 551 VVKD--KQIAQAELTGQWEKRLEEIRSGSSVKDFKSEITEYTKTITHELLIAGASISG 606