Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 670 a.a., DNA topoisomerase III (RefSeq) from Shewanella loihica PV-4

 Score =  115 bits (288), Expect = 9e-30
 Identities = 137/515 (26%), Positives = 227/515 (44%), Gaps = 63/515 (12%)

Query: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIG--GDDTRY-KRVVFNEITKKAIQEAFS 158
           LR+L K A  +  A D DREG+ +   +   +G  GD     +R++ +++  +A++ A  
Sbjct: 88  LRKLVKQASQLVNAGDPDREGQLLVDEVIAYLGVKGDKLEQTQRLLVSDLNPQAVKRALG 147

Query: 159 Q--PGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 211
           Q       I    +  AR   D + G  ++    L   K+     LS GRVQ+  + LVV
Sbjct: 148 QLRSNREFIPLSTSALARSRADWLYGMNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVV 207

Query: 212 EREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKP--------LNEAQAMAA 263
            R+  I  F+ + ++E+ A+L T + A   F+   +  EA +P        L+   A   
Sbjct: 208 RRDEAIEHFVSKPFYEVLANLYTQEQA--HFKAKWQPSEACQPYMDEEGRVLSRRLAENV 265

Query: 264 LEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GY 322
           + ++      V   + +        P+  S+LQ  A+ R G   K  +   Q LYE    
Sbjct: 266 VGRITEQPAKVTDLQAKDKQQGQPLPYNLSSLQIDAAKRFGMSAKTVLDTCQSLYEKHKL 325

Query: 323 ITYMRTDSTNLSADALDMARSYIEREF-------GKQYLPEAPLVYGSKEGAQ-EAHEAI 374
           ITY R+DS  L  + L +A S I            +   P+  +V  +   A+ +AH AI
Sbjct: 326 ITYPRSDSRYLPKEQLALAPSVIGAVLKGAGELTAQCAAPDLKIVSKAWNDAKVDAHHAI 385

Query: 375 RPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTV--AAGDFELRAKG 432
            P++       LS + +  +++Y  + RQ+LA   P  +Y  T V V  A G F  +AK 
Sbjct: 386 VPTE---KVANLSALTQAEKQIYLQLARQYLAQFYPVYRYHETQVEVEIAGGHFHTKAKQ 442

Query: 433 RILKFDGYTRVLPQQS---KPGEDD----VLPEMVQGEALKLIQIDPSQHFTKPPARFTE 485
            I    G+ ++ P++S     GE D     LP + +G+ L   Q +  +  T+PP  FT+
Sbjct: 443 EIAL--GWKQLFPKRSDDKTDGEGDEALAQLPPLHKGQMLHSGQGELIEKQTQPPKAFTD 500

Query: 486 ASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKM 528
           A+L+  M                 E  G+G  +T A II  +  RG++    +   S  +
Sbjct: 501 ATLLSAMTGISRYVTNPEIRKILKETDGLGTEATRAGIIELLFKRGFLARQGKSIVSTPV 560

Query: 529 GDIVTERLSESFSNLMDYGFTADMEENLDDVAQGE 563
           G  +   L ES +       TA  E +LD +++ E
Sbjct: 561 GRGLINSLPESATT---PDMTALWESHLDAISRKE 592