Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 898 a.a., DNA topoisomerase I (RefSeq) from Shewanella loihica PV-4

 Score = 1186 bits (3068), Expect = 0.0
 Identities = 585/874 (66%), Positives = 700/874 (80%), Gaps = 7/874 (0%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAS---KEPAAKRGKAA 57
           MGKSLVIVESPAKAKTINKYLG  Y+VKSS+GHIRDLPTS S+ AS   K PA  R K +
Sbjct: 17  MGKSLVIVESPAKAKTINKYLGKDYIVKSSVGHIRDLPTSSSSDASSSTKSPAEVR-KMS 75

Query: 58  GEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATD 117
            E  A    +KA++ LVARMGVDP+ GWKAKY+ LPGKEKV++EL+ LA++AD I+LATD
Sbjct: 76  TEEKAKYKADKAKKALVARMGVDPERGWKAKYQTLPGKEKVVKELQSLAENADHIFLATD 135

Query: 118 LDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFL 177
           LDREGEAIAWHL+E IGGD  RY+RVVFNEITK AIQEAFS P +L+ + VNAQQARRFL
Sbjct: 136 LDREGEAIAWHLQEVIGGDPERYQRVVFNEITKSAIQEAFSHPSQLNTNMVNAQQARRFL 195

Query: 178 DRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKN 237
           DRVVG+MVSPLLW K+ARGLSAGRVQSVA +LVVERE EI+AF+PEE+W+IHA+L T  N
Sbjct: 196 DRVVGFMVSPLLWKKVARGLSAGRVQSVATRLVVEREGEIKAFVPEEFWDIHAELTTLGN 255

Query: 238 AKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQ 297
             ++ +VA+ KG+ F P+NEAQAM A+  LK S Y V  RE + TSSKPSAPFITSTLQQ
Sbjct: 256 EGLKMQVAKFKGDNFNPVNEAQAMVAVNALKDSKYQVSSREVKATSSKPSAPFITSTLQQ 315

Query: 298 AASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEA 357
           AAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +ALD  R  I +E+G +YLP+A
Sbjct: 316 AASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVRDMIGKEYGDKYLPDA 375

Query: 358 PLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLST 417
           P+ YGSKEGAQEAHEAIRPSDVN   T LS MERDA+RLYELIWRQF+ACQM PA+Y +T
Sbjct: 376 PIRYGSKEGAQEAHEAIRPSDVNVSATSLSDMERDAQRLYELIWRQFVACQMTPAKYDAT 435

Query: 418 SVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD-VLPEMVQGEALKLIQIDPSQHF 476
            +TV AGD+EL+A GR LKFDG+TRV     K  E+D  LP + +G+ L L ++ P QHF
Sbjct: 436 RLTVTAGDYELKASGRTLKFDGWTRVQTALKKKNEEDNTLPMVAEGDVLALEELLPKQHF 495

Query: 477 TKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERL 536
           TKPPAR++EASLVKE+EKRGIGRPSTYA IISTIQDRGYV + NRRFY+EKMG+IV+E L
Sbjct: 496 TKPPARYSEASLVKELEKRGIGRPSTYATIISTIQDRGYVKVENRRFYAEKMGEIVSESL 555

Query: 537 SESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAE--SSEDGMRAN 594
             SF  LM Y FTA ME+ LD+VAQG+ +WK VLD FY   + +L+ AE    E GMR N
Sbjct: 556 IGSFEELMSYDFTAGMEQTLDNVAQGQLEWKKVLDNFYKGLTAQLEKAELPPEEGGMRPN 615

Query: 595 QPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGES 654
           +  +T+I C  CGRPM IRT +TGVFLGCSGY+LPPKERCK T+NL PG+E  +++  ++
Sbjct: 616 EMVLTDIACPTCGRPMGIRTGTTGVFLGCSGYALPPKERCKTTMNLTPGEEAVSENSEDA 675

Query: 655 ESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLEC 714
           E+  L  KHRC +C TAMD+YL+DEK KLH+CGNNP C GYE+E+G ++IKGYEGP +EC
Sbjct: 676 ETDALRAKHRCDVCGTAMDSYLIDEKRKLHVCGNNPICGGYEVEQGQFKIKGYEGPIIEC 735

Query: 715 DKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYV 774
           D+CG++M+LK GRFGK+FGCTN  CKNTRKLLK+GE APPK D + +PELKC K D  +V
Sbjct: 736 DRCGNDMELKNGRFGKYFGCTNSECKNTRKLLKNGEVAPPKEDPIHLPELKCTKSDGYFV 795

Query: 775 LRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPAVIRY 834
           LRDGA+G+FLAAS FPK+RETRAPLV E+V ++  + PKY +L DAP  D DG  AV+R+
Sbjct: 796 LRDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPVADEDGNKAVVRF 855

Query: 835 SRKTKEQYVQSEVDGKPTGWKAFYDGNAWKVEDK 868
           SRKTKEQYV +E+DGK TGW A + G  W  E K
Sbjct: 856 SRKTKEQYVATEIDGKATGWTAKFVGGKWVSEAK 889