Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 818 a.a., topoisomerase IA from Dechlorosoma suillum PS

 Score =  164 bits (416), Expect = 2e-44
 Identities = 221/864 (25%), Positives = 355/864 (41%), Gaps = 122/864 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEP 49
           M K L+I E P+ A+ I   LG           +  +V S++GH+ +L    +   +++P
Sbjct: 1   MSKILIIPEKPSVAQDIAAALGGFSKREDWFERDDAIVCSALGHLVEL----ACPEAEDP 56

Query: 50  AAKRGKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDA 109
               G      PA+           +R  + P     A+  +L   +K++       +D 
Sbjct: 57  ----GFDLARLPAIP----------SRFNLAPIAKTSARLSLL---KKLMNR-----QDV 94

Query: 110 DTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQ--PG-ELDID 166
             +  A D  REGE I  ++    G      +R+    +T  AI+EAF++  PG ELD  
Sbjct: 95  QLVVNACDAGREGELIFRYIYLCCGCRKPM-QRMWIQSMTPAAIKEAFAKRRPGAELD-G 152

Query: 167 RVNAQQARRFLDRVVGY---MVSPLLWAKIA--RGLSA-GRVQSVAVKLVVEREREIRAF 220
             N+ Q+R   D +VG        +L  ++   R LS  GRVQ+  + L+V RE  IR+F
Sbjct: 153 LFNSAQSRSEGDWLVGINGTRAYSILETRVTGERTLSTVGRVQTPTLALIVAREEAIRSF 212

Query: 221 IPEEYWEIHADLGT------AKNAKVRFEV--AREKGEAFKPLNEAQAMAALEKLKASSY 272
           I + Y+EI  +         AK     F+   +     A +  ++A+A A + K      
Sbjct: 213 IAKPYYEIQGEFAAKTGVYGAKWIDTAFQADPSTPDARAERLFDKAKADAIVAKCTGKRP 272

Query: 273 SVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYI-TYMRTDST 331
           S V      + S P   F  +TLQ+ A+ + GF   +T+ +AQ LYE   + TY RTDS+
Sbjct: 273 SSVADATTDSISTPPKLFDLTTLQREANKKFGFSASQTLAIAQALYEKQKVLTYPRTDSS 332

Query: 332 NLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTH----PTKLS 387
            L  D LD AR+ + R  G   L  +P    +    +        + ++ H    PT L 
Sbjct: 333 ALPEDYLDTARATLTR-LGDGGLTVSPFAAKAVAMVKPDKRIFNNAKISDHFAIIPTGLV 391

Query: 388 GMERDAE--RLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLP 445
                 E  ++++L+ R+F+A   PPA+YL T           RA GR+L  +G+  V  
Sbjct: 392 SATLSGEEAKIFDLVSRRFIAAFFPPAKYLQTVRLTVVEQETFRASGRVLVEEGWLAVYG 451

Query: 446 QQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEK----------- 494
           +++   ED  L  + + E  +  +I+     TKPP RFTEA+L+  ME            
Sbjct: 452 KEADDSEDPALCAVAKDELPENRRIEAVSLKTKPPLRFTEATLLGAMESAGADIEDDELR 511

Query: 495 -----RGIGRPSTYAAIISTI---------QDRGYVTLHNRRFY-SEKMGDIVTERLSES 539
                RG+G P+T A+ I  +           + YV    +    + K   +V       
Sbjct: 512 EAMKDRGLGTPATRASTIEALLADKDGKGRSIQPYVVREKKNLAPTNKAFKLVKFLRENG 571

Query: 540 FSNLMDYGFTADMEENLDDVAQG---ERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQP 596
            + L     T   E  L ++ +G     D+   +     +F  ++Q          A Q 
Sbjct: 572 LTALASAETTGLWEFKLREMEKGRCQRSDFMGEIAALAREFVTRVQALAKDLPASAAMQA 631

Query: 597 TMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESES 656
                 C +CG   M  TA T     CS         C   +       + +D EGE   
Sbjct: 632 KPMAAACPKCGNTTMGATAKT---FSCS---------CGFRIWREVAGRVLSDTEGEK-- 677

Query: 657 RVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGPSLECDK 716
             L+ +   P  A    +        L +  +    V +  E+     +  E  ++ C +
Sbjct: 678 --LIAQGSLPTLAGFTSSKKKPFAAGLKLAEDLSGKVDFVFEQ---HTESSEAAAVACPQ 732

Query: 717 CGSEMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAAP--PKM----DKVDMPELKCEKV 769
           CG  M+ + G  G F+GC+  P C +T    K G+A P  PK+     KV      C+K 
Sbjct: 733 CGKPMRRRKGGTGFFWGCSGYPDCNHTMD-DKDGKAVPKQPKVARQAGKVGETCPTCQKG 791

Query: 770 DDTYVLRDGASGLFLAASQFPKNR 793
             T    +G S  FL  +++P  R
Sbjct: 792 KLTGRQSNGTS--FLGCTKYPACR 813