Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 861 a.a., DNA topoisomerase III from Dechlorosoma suillum PS

 Score =  160 bits (406), Expect = 2e-43
 Identities = 181/675 (26%), Positives = 295/675 (43%), Gaps = 100/675 (14%)

Query: 1   MGKSLVIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEP 49
           MGK L+I E P+ A  I K LG           + +V+ S+IGH+ +L         +E 
Sbjct: 1   MGKQLIIAEKPSVAADIAKALGGFTKHDDYFESDNFVLSSAIGHLLELVIP------EEY 54

Query: 50  AAKRGKAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDA 109
             KRGK +                 A + V P H      E    + K++ +L +  KD 
Sbjct: 55  EVKRGKWS----------------FAHLPVIPPHFELKPVEKTESRLKLLTKLIK-RKDV 97

Query: 110 DTIYLATDLDREGEAIAWHL-REAIGGDDTRYKRVVFNEITKKAIQEAFSQ--PGELDID 166
           D +  A D  REGE I  ++ R A  G   +  R+    +T +AI++ F++   GE    
Sbjct: 98  DGLVNACDAGREGELIFNYIARHAKSGKAVQ--RLWLQSMTPQAIRDGFARLRRGEEMQG 155

Query: 167 RVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVKLVVEREREIRAFI 221
             +A   R   D +VG   +  + A  ++       + GRVQ+  + LVVERER+IR F 
Sbjct: 156 LGDAAVCRSESDWLVGINGTRAMTAFNSKTGGFHLTTVGRVQTPTLSLVVERERKIREFK 215

Query: 222 PEEYWEIHADLGTAK---NAKVRFEVAREKGE-----AFKPLNEAQAMAALEKLKASSYS 273
              YWE+ A    A      K   E  + K E     A +  +EA+A A   K +     
Sbjct: 216 ARPYWEVEATFAAAAGEYKGKWFDEAFKGKDEDEHARADRLWDEARAKALQAKCEGQP-G 274

Query: 274 VVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GYITYMRTDSTN 332
            V  E +P++      F  ++LQ+ A++R GF  K T+ +AQ LYE    +TY RTDS  
Sbjct: 275 EVSEEAKPSTQLSPLLFDLTSLQREANSRFGFSAKNTLGLAQALYEKHKVLTYPRTDSRA 334

Query: 333 LSADALDMARSYIEREFGKQY------------------LPEAPLVYGSKEGAQEA---- 370
           L  D L   ++ ++   G+                    + ++  V  +K     A    
Sbjct: 335 LPEDYLGTVQATLQMFNGENLTKGSDTSVVDRYGIFANKILKSKWVVPNKRIFNNAKISD 394

Query: 371 HEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL-STSVTVAAGDFELR 429
           H AI P+     P  LS  E   ++LY+L+ ++FLA   P A+YL +T +T  AG+   +
Sbjct: 395 HFAIIPT--TQAPKNLSEPE---QKLYDLVVKRFLAVFFPAAEYLITTRITRVAGE-PFK 448

Query: 430 AKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLV 489
            +G++L   G+  +  ++ + G++  L  + QGE ++  ++  +Q+ T+PPAR++EA+L+
Sbjct: 449 TEGKVLVNPGWLAIYGREGQEGDEGNLVAVSQGEKVQTEEVAVNQNETRPPARYSEATLL 508

Query: 490 KEME----------------KRGIGRPSTYAAIISTIQDRGYVTLHNRRFY-SEKMGDIV 532
             ME                 RG+G P+T A II  +    Y+    R    + K   ++
Sbjct: 509 SAMEGAGKMVDDEELRAAMAGRGLGTPATRAQIIEGLITEQYLHREGRELIPTAKAFSLM 568

Query: 533 TERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGMR 592
           T       S L     T + E  L  + +G+      + E        +  A+S +    
Sbjct: 569 TLLNGLGISELTSPELTGEWEWKLAQIERGDLSRSAFMQEIEEMTRHIVDRAKSYDSDTV 628

Query: 593 ANQPTMTNIPCKECG 607
                +   PC +CG
Sbjct: 629 PGDFGLLKSPCPKCG 643