Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 823 a.a., DNA topoisomerase I from Methanococcus maripaludis S2

 Score =  245 bits (625), Expect = 9e-69
 Identities = 233/818 (28%), Positives = 352/818 (43%), Gaps = 90/818 (11%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           L+I E P  AK I + LG       +     +L  +G +            A G    L 
Sbjct: 4   LIICEKPNVAKKIAEALGKPKKKSHNSVPYYELERNGESIVV-------ASAVGHLYTLQ 56

Query: 65  PKEKARRQLVARMGVDP--DHGWKAKYEILPGK--EKVIEELRRLAKDADTIYLATDLDR 120
            K K +       G  P  D  W     +   K  +K I+ L++++KDA+  Y+ATD D 
Sbjct: 57  EKTKTK------FGDYPVYDINWVPASTLDEKKYIQKYIDALKKVSKDANKFYVATDWDI 110

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGE I +H      G    + R+ F+ +TKK I +A+  P E+D   V+A  +R  +D  
Sbjct: 111 EGELIGYHALNFSCGQKNAH-RLRFSSLTKKEILKAYENPNEIDFGLVDAGDSRHKIDWY 169

Query: 181 VGYMVSPLLWAKIA-----RGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTA 235
            G  VS  L   ++     + LS GRVQ  A+  +V++E EIR F+P  YW + A L   
Sbjct: 170 FGINVSRALMQAVSSVKRWKTLSTGRVQGPALAFLVDKELEIRNFVPTPYWVLEALLDND 229

Query: 236 KNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSS-KPSAPFITST 294
             A    E         K  +E QA  A EK+K    + V    +   +  P+ PF    
Sbjct: 230 LIAVHELE---------KFWDEEQANKAYEKVKGQKQATVSDVKKSMKTIPPNPPFDLGA 280

Query: 295 LQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYL 354
           LQ+ A N   F  KKT  +AQ+LYE GY +Y RT S  L  D   M          K Y 
Sbjct: 281 LQREAHNMFRFSPKKTQEVAQKLYEKGYCSYPRTSSQKLPDDKAYMDEVLKNLSKNKNYK 340

Query: 355 PEAPLVYG------SKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQ 408
           P    +        S +    AH A+   DV         +  D  +LYELI R+ +A  
Sbjct: 341 PYIETILNENRKPISGKNDDPAHPAVHAVDVPKEK-----LPDDELKLYELIARRTIALY 395

Query: 409 MPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLI 468
              A+   + + +       +  G     +G+  +    +K  E + LPE+ + + + + 
Sbjct: 396 WDNAKREYSKINLDINGETFKLSGSRTVEEGWHEIY-YYTKFDEVE-LPELKKNDVINVN 453

Query: 469 QIDPSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKM 528
            I+     TKPP R+T AS++KE+EKR +G  +T A I+  +  RGYV + +       +
Sbjct: 454 NINFEAKETKPPKRYTMASIIKELEKRKLGTKATRADILEKLTKRGYV-IEDGSLTVTDL 512

Query: 529 GDIVTERLSESFSNLMDYGFTADMEENLDDVAQGE-------RDWKNVLDEFYGDFS-KK 580
           G  VTE L +    +++   T D+E+ L+ +   +       ++ K+ L +  G+F  K+
Sbjct: 513 GIGVTETLRKYCPEIVEETLTRDLEDKLELIQDKKIKKEEVIQETKDKLTKILGEFRLKE 572

Query: 581 LQTAESSEDGMRANQPTMTNIPCKECGRPM-MIRTASTGVFLGCSGYSLPPKERCKATVN 639
            +      D + +   ++  I   +CG  M +IRT     F+GCS Y       C+ T  
Sbjct: 573 KEIGTELVDKLDSTNRSLQIIGKCKCGGDMIIIRTKGKKRFVGCSNY-----PDCEVTFP 627

Query: 640 LVPGDEIAADDE-GESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIE 698
           L     I   +E  E     ++G  R  IC                    NPDC     E
Sbjct: 628 LPQKGRIKVLNEVCEKCQNPVIGLDRIKICV-------------------NPDCSTRISE 668

Query: 699 EGNYRIKGYEGPSLECDKCGSEMQLKTGRFGKFFGCTN-PACKNTRKLLKSGEAAPPKMD 757
           E    I+  E     C KCG+++ +K G +G F GC N P CK T KL  +GE+   ++ 
Sbjct: 669 EDKKEIEKAEKEEKICPKCGNKLLIKKGPYGVFRGCENYPKCKYTEKL--NGESNEKEIV 726

Query: 758 KVDMPELKCEKVDDTYVLRDGASGLFLAASQFPKNRET 795
                  KC K       R G  G F+  S +PK R T
Sbjct: 727 G------KCPKCGSDLYKRKGRFGEFIGCSNYPKCRHT 758