Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 686 a.a., DNA topoisomerase III from Marinobacter adhaerens HP15

 Score =  127 bits (319), Expect = 2e-33
 Identities = 160/604 (26%), Positives = 240/604 (39%), Gaps = 75/604 (12%)

Query: 96  EKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDT--RYKRVVFNEITKKAI 153
           +K +  +  L K A  I  A D DREG+ +   L E         RY     + ++ K  
Sbjct: 88  KKQVRVIGGLLKSASQIVNAGDPDREGQLLVDELLEHFNNKKPVIRYWSNAIDSVSVKRA 147

Query: 154 QEAFSQPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARG-----LSAGRVQSVAVK 208
                   E      +A + R   D ++G  +S     +  RG     L+ GRVQ+  + 
Sbjct: 148 LANMKDNQEYH-GFADAAEGRGKADWLIGMNLSRAYTLRAQRGGSRALLTVGRVQTPTLA 206

Query: 209 LVVEREREIRAFIPEEYWEIHADLGTAKNA-----KVRFEVAREKGEAFKPLNEAQAMAA 263
           LVV R+REI +F    +  I A++     A     K + + A    E  + ++ A A A 
Sbjct: 207 LVVTRDREIESFKAVPFHTIRAEIQHPNGAFWASWKAKEDQAGLDAEG-RLVDTAVANAL 265

Query: 264 LEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYI 323
           +E L     S+ + +           F  S +   AS R G+  +  +   Q LYE   +
Sbjct: 266 VESLTGKPGSISEYKQEAKKQNHPLTFSLSDMTALASKRFGYSAEDVLKTCQSLYETHKL 325

Query: 324 T-YMRTDSTNLS----ADALDMARSYIEREFGKQYLPE-APLVYGSKEGAQE-------- 369
           T Y RTD   L     ADA D+  S       K   P  A +V G+    +         
Sbjct: 326 TTYPRTDCAYLPESQFADAPDVLASV------KAVNPSLASIVDGADTSIRSRTWNDKKV 379

Query: 370 -AHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFEL 428
            AH  I P+       KL+  ER+   +Y+L+ R +LA   P  +++ST+VTV       
Sbjct: 380 SAHHGIIPTMHKGDLNKLNDKERN---IYDLVVRAYLAQFYPVHEFMSTTVTVDVEGETF 436

Query: 429 RAKGRILKFDGYTRVLPQQSKPGEDDV------LPEMVQGEALKLIQIDPSQHFTKPPAR 482
            AKG+++   G+  V    S   + D       LP+M QG+A+   Q       TKPPAR
Sbjct: 437 SAKGKVVTKSGWHDVYLDNSDEDDSDQDDESQSLPKMGQGDAITCGQAARRDAKTKPPAR 496

Query: 483 FTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYS 525
           FTE +L+  M                 E  GIG  +T A+IIS ++ R Y+    ++  S
Sbjct: 497 FTEGTLITAMVNIHRFVTDPQHKKMLREGDGIGTEATRASIISELKRRNYLETKGKQIIS 556

Query: 526 EKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVL---DEFYGDFSKKLQ 582
             +G  + + L E   + +    TA  E  L  V  G+ D    +   + F  +   K  
Sbjct: 557 TTLGRSMIDALPEVVKSPV---LTALYERMLQSVESGKADLAAFITKQEAFIREQVAKAN 613

Query: 583 TAESSEDGMRANQPTMTNIPCKECGRPMMIR--TASTGVF-LGCSGYSLPPKERCKATVN 639
               +  G +   P      C  CG  +  R      G F  GCS Y       CK T  
Sbjct: 614 DGAVAIAGGKEAAPVSDVFKCMSCGAGLSRRPLPKKKGHFWWGCSNY-----PTCKQTYP 668

Query: 640 LVPG 643
            V G
Sbjct: 669 DVKG 672