Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 702 a.a., DNA topoisomerase III (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (262), Expect = 9e-27
 Identities = 132/552 (23%), Positives = 224/552 (40%), Gaps = 82/552 (14%)

Query: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIG--GDDTRY-KRVVFNEITKKAIQEAFS 158
           L++L K ADT+  A D DREG+ +   +   +G  GD  +  +R++ +++  +A++ A S
Sbjct: 88  LKKLIKQADTLVNAGDPDREGQLLVDEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALS 147

Query: 159 Q--PGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 211
           Q       I    +  AR   D + G  ++    +   K+     LS GRVQ+  + L+V
Sbjct: 148 QLRSNREFIPLSTSALARSRADWLYGMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLIV 207

Query: 212 EREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKP--------LNEAQAMAA 263
            R+ EI  F  + ++E+ A L T K  +  F    +  EA +P        L++  A   
Sbjct: 208 RRDEEIAHFQSKPFYEVLAHLVTDK--QQFFSAKWQPSEACQPYMDDEGRVLSKGLAQNV 265

Query: 264 LEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GY 322
           + ++      V +   +        P+  S LQ  A+ R G   K+ +   Q LYE    
Sbjct: 266 VRRITDKPAKVTQLSTKDKQQSAPLPYSLSALQIDAAKRFGMSAKEVLDTCQSLYERHKL 325

Query: 323 ITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQ-------------E 369
           ITY R+DS  L  +   +A S +           AP +    E                +
Sbjct: 326 ITYPRSDSRYLPTEQHGLASSVL-----NAITSGAPELVAHSEAPNPRLKSKAWDDKKVD 380

Query: 370 AHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELR 429
           AH AI P++   +   LS  ER   +LY  I RQ+LA   P   Y  T+V V       +
Sbjct: 381 AHHAIIPTEKQPNLGSLSQRER---QLYLHIARQYLAQFYPAYCYSETAVEVTIEGGLFK 437

Query: 430 AKGRILKFDGYTRVLPQQSKPGED--------------------DVLPEMVQGEALKLIQ 469
            K R  K  G+ ++  ++    +D                      LP ++ G+ L   Q
Sbjct: 438 TKARQDKSLGWKQLFAREEGERKDTSNTETFAQDDKDKDEGEYAGQLPPLILGQVLHCNQ 497

Query: 470 IDPSQHFTKPPARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTIQD 512
            +  +  T+PP  FT+A+L+  M                 E  G+G  +T A II  +  
Sbjct: 498 GELVEKQTQPPKAFTDATLLGAMTGINRYVTDPEIRKILKETDGLGTEATRAGIIELLFK 557

Query: 513 RGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDE 572
           RG++    +   + ++G  +   L  S +       TA  E +L+ +   +  ++  +  
Sbjct: 558 RGFIQRQGKSIVATEVGKGLINSLPLSATT---PDMTALWEASLNGICHKDISYQGFMQP 614

Query: 573 FYGDFSKKLQTA 584
             G     +Q A
Sbjct: 615 LLGTLHSLIQNA 626