Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 878 a.a., DNA topoisomerase I (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 1181 bits (3054), Expect = 0.0
 Identities = 582/876 (66%), Positives = 699/876 (79%), Gaps = 16/876 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGKSLVIVESPAKAKTINKYLG +++VKSS+GHIRDLPTS  +  +++      K+A E 
Sbjct: 1   MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSISDGTEKV-----KSAAEV 55

Query: 61  PALSPKEKAR-------RQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113
             +SP+EKAR       + LV+RMGV+P+ GW AKY+ILPGKEKV++EL+ LA  AD IY
Sbjct: 56  KKMSPEEKARYKKVKDHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIY 115

Query: 114 LATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQA 173
           LATDLDREGEAIAWHL+E IGGD +RY+RVVFNEITK AIQEAFS+P  LD + VNAQQA
Sbjct: 116 LATDLDREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPASLDTNMVNAQQA 175

Query: 174 RRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLG 233
           RRFLDRVVG+MVSPLLW K+ARGLSAGRVQSVAV+LVVERE EI+AF+PEE+W++HA L 
Sbjct: 176 RRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLN 235

Query: 234 TAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITS 293
           T  +  +R EV +    AF+P NE QA+AA++ L ++S+ V+ RED+ T SKPSAPFITS
Sbjct: 236 TPSSEALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFITS 295

Query: 294 TLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQY 353
           TLQQAAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +ALD  R  I +E+G +Y
Sbjct: 296 TLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAKY 355

Query: 354 LPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQ 413
           LP  P+ YGSKEGAQEAHEAIRPS+V      L+ MERDA+RLYELIWRQF++CQM PA 
Sbjct: 356 LPAEPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPAL 415

Query: 414 YLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQ-QSKPGEDDVLPEMVQGEALKLIQIDP 472
           Y +T +TV A D+EL+A GRIL+FDG+TRV    + K  ED+ LP + +G+ L L++++P
Sbjct: 416 YDATKLTVKAADYELKATGRILRFDGWTRVQTAIKKKNEEDNTLPAVNEGDVLSLVELEP 475

Query: 473 SQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIV 532
            QHFTKPPAR++EASLVKE+EKRGIGRPSTYA IISTIQ+RGYV + NRRFY+EKMG+IV
Sbjct: 476 KQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIV 535

Query: 533 TERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAE--SSEDG 590
           +ERL  SF+ LM Y FTA ME+ LDDVA+GE DWK VLD FY DF+K+L+ AE    E G
Sbjct: 536 SERLVNSFAELMSYDFTASMEQTLDDVAKGELDWKKVLDGFYADFTKQLEKAELAPEEGG 595

Query: 591 MRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADD 650
           MR NQ  MTNI C  CGRPM IRT +TGVFLGCSGY LPPKERCK T+NL PG E  +D 
Sbjct: 596 MRLNQMVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDS 655

Query: 651 EGESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGP 710
           E ++E+  L  KHRC IC TAMD+YLLDEK KLH+CGNNP C GYE+EEG ++IKGYEGP
Sbjct: 656 E-DAETDALRAKHRCGICGTAMDSYLLDEKRKLHVCGNNPVCEGYEVEEGQFKIKGYEGP 714

Query: 711 SLECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVD 770
            +ECD+CG +M+LK GRFGK+FGCTN  CKNTRKLLK+GEAAPPK D + +PELKC K D
Sbjct: 715 LIECDRCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSD 774

Query: 771 DTYVLRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPA 830
             +VLRDGA+G+FLAAS FPK+RETRAPLV E+V ++  + PKY +L DAP  D DG  A
Sbjct: 775 AHFVLRDGAAGIFLAASTFPKSRETRAPLVEELVKYREFLWPKYQYLADAPIADDDGNKA 834

Query: 831 VIRYSRKTKEQYVQSEVDGKPTGWKAFYDGNAWKVE 866
           V+++SRKTK+QYV +EVDGK TGW A Y    W  E
Sbjct: 835 VVKFSRKTKDQYVATEVDGKATGWSAHYVNGKWVSE 870