Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 651 a.a., DNA topoisomerase III from Klebsiella michiganensis M5al

 Score =  119 bits (298), Expect = 6e-31
 Identities = 132/551 (23%), Positives = 236/551 (42%), Gaps = 76/551 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIG---GDDTRYKRVVFNEIT 149
           P   K +  ++RL  DA  +  A D DREG+ +   + + +        + +R + N++ 
Sbjct: 79  PSVTKQLNVIKRLLGDAQEVIHAGDPDREGQLLVDEVLDYLQLAPEKRQQVQRCLINDLN 138

Query: 150 KKAIQEAFSQ----------------PGELD-IDRVNAQQARRFLDRVVGYMVSPLLWAK 192
            +A++ A ++                    D +  +N  +A   L R  GY         
Sbjct: 139 PQAVERAINRLRANSEFVPLCVSALARARADWLYGINMTRAYTILGRNAGYQGV------ 192

Query: 193 IARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAF 252
               LS GRVQ+  + LVV R+ EI  F+ ++++++ A + T K+   RF       EA 
Sbjct: 193 ----LSVGRVQTPVLGLVVRRDEEIENFVAKDFFDVKAHIVTPKDE--RFVATWVPSEAC 246

Query: 253 KP--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLG 304
           +P        L+ + A   +++++    +V    D+  S     PF  S LQ  A+ R G
Sbjct: 247 EPYQDEEGRLLHRSLAEHVVKRIEGQPATVTAYNDKRDSEPAPLPFSLSALQIEAAKRFG 306

Query: 305 FGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIE--REFGKQYLPEAPLVY 361
           F  +  + + Q+LYE    ITY R+DS  L  +      + +          LP+ P+V 
Sbjct: 307 FSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHAVLNAISVHAADLLPQ-PVVD 365

Query: 362 GS------KEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
                    +   +AH AI P+   +   KLS  E   E++Y LI RQ+L    P A + 
Sbjct: 366 PEIRNRCWDDKKVDAHHAIIPT-ARSSQVKLSDNE---EKVYGLIARQYLMQFCPDAVFR 421

Query: 416 STSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPS 473
              + +   + +  AK R L   G+  +L  + +  E+D   LP + + + L   + +  
Sbjct: 422 KCQIDLDIANGKFVAKARFLAEAGWRTLLGNKERDEENDGMPLPVVAKDDELLCEKGEVV 481

Query: 474 QHFTKPPARFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYV 516
           +  T+PP  FT+A+L+            K+++K      G+G  +T A II  +  RG++
Sbjct: 482 ERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFL 541

Query: 517 TLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGD 576
           T   R  +S   G  +   L E  +       TA  E  L  +++ +  +++ +    G 
Sbjct: 542 TKKGRYIHSTDAGKALFHSLPEMATR---PDMTAHWESILTQISEKQCRYQDFMQPLVGT 598

Query: 577 FSKKLQTAESS 587
             + +  A S+
Sbjct: 599 LFQLIDQARST 609