Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 635 a.a., DNA topoisomerase 3 from Enterobacter sp. TBS_079

 Score =  105 bits (263), Expect = 6e-27
 Identities = 126/551 (22%), Positives = 228/551 (41%), Gaps = 76/551 (13%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIAWHLR---EAIGGDDTRYKRVVFNEIT 149
           P   K +  ++R   DA  +  A D DREG+ +   +    E       + +R + N++ 
Sbjct: 79  PSVTKQLNVIKRFLHDATEVIHAGDPDREGQLLVDEVLDYLELAPEKRQQVQRCLINDLN 138

Query: 150 KKAIQEAFSQ----------------PGELD-IDRVNAQQARRFLDRVVGYMVSPLLWAK 192
            +A++ A S+                    D +  +N  +A   L R  GY         
Sbjct: 139 PQAVERAISRLRANSEFIPLCVSALARARADWLYGINMTRAYTILGRNAGYQGV------ 192

Query: 193 IARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAF 252
               LS GRVQ+  + LVV R+ EI  F+ ++++E+ A + T K+   RF    +  +A 
Sbjct: 193 ----LSVGRVQTPVLGLVVRRDEEIENFVAKDFFEVKAHIVTPKDE--RFTAVWQPSDAC 246

Query: 253 KP--------LNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLG 304
           +         L+   A   + ++      V    D+  S     PF  S LQ  A+ R G
Sbjct: 247 ESYQDEEGRLLHRPLAEHVVNRITGQPAIVTSYNDKRESEPAPLPFSLSALQIEAAKRFG 306

Query: 305 FGVKKTMMMAQRLYEA-GYITYMRTDSTNLSADALDMARSYIE--REFGKQYLPEAPLVY 361
              +  + + Q+LYE    ITY R+DS  L  +      S +          LP+ P+V 
Sbjct: 307 LSAQNVLDICQKLYETHKLITYPRSDSRYLPEEHFAGRHSVMNAIAVHAPDLLPQ-PVVN 365

Query: 362 GS------KEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
                    +   +AH AI P+      + ++  E +A ++Y L+ RQ+L    P A + 
Sbjct: 366 PDIHNRCWDDKKVDAHHAIIPT---ARASNVNLTENEA-KVYNLVARQYLMQFCPDAVFR 421

Query: 416 STSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD--VLPEMVQGEALKLIQIDPS 473
              + +     +  AK R L   G+  +L  + +  E+D   LP + + + L   + +  
Sbjct: 422 KCVIELEIAKGKFIAKARFLAEAGWRTLLGNKERDEENDGTPLPVVAKDDELLCEKGEVV 481

Query: 474 QHFTKPPARFTEASLV------------KEMEK-----RGIGRPSTYAAIISTIQDRGYV 516
           +  T+PP  FT+A+L+            K+++K      G+G  +T A II  +  RG++
Sbjct: 482 ERQTQPPRHFTDATLLSAMTGIARFVQDKDLKKILRATDGLGTEATRAGIIELLFKRGFL 541

Query: 517 TLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGD 576
               R  +S + G  +   L E  +       TA  E  L  +++ +  +++ +    G 
Sbjct: 542 EKKGRYIHSTEPGRALIHSLPELAAR---PDMTAHWESVLTQISEKQCRYQDFMQPLVGT 598

Query: 577 FSKKLQTAESS 587
             + +  A ++
Sbjct: 599 LYELINQARNT 609