Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 862 a.a., DNA topoisomerase III (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  130 bits (327), Expect = 3e-34
 Identities = 93/313 (29%), Positives = 152/313 (48%), Gaps = 34/313 (10%)

Query: 278 EDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAG-YITYMRTDSTNLSAD 336
           + R  + +P  PF  +TLQ+ A+ R G+  K T+  AQ LYE    ITY RTDS +L+ +
Sbjct: 365 QGRAGTQQPPLPFDLTTLQREANTRFGYSAKDTLTHAQSLYETRKLITYPRTDSRHLTKE 424

Query: 337 ALDMARSYIEREFGKQYLPEAPLVYGSKEGAQEA-----------HEAIRPSDVNTHPTK 385
                 +++ R     Y  E  L  G  +  +             H AI P+    + T+
Sbjct: 425 LFGEILNHL-RAVHHLYPEETMLAVGRIKSGKARFACVDDRKVTDHHAIIPTARKGNLTQ 483

Query: 386 LSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLP 445
           LS  ER+   +Y+++ R+ +A   P A++ +++VTV  G+    AKG++ K  G+  V P
Sbjct: 484 LSAPERN---IYDMVCRRTIAAFCPEAKFSTSTVTVMVGEHPFIAKGKVFKDKGWMVVEP 540

Query: 446 QQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEME------------ 493
            ++   ED  LP++ +G  L  + + P +  TK PA FT+ASL+  ME            
Sbjct: 541 WRT--AEDTPLPQLRKGSKLLTLDVGPVKRQTKAPAHFTDASLLAAMETAGRLVEDDALR 598

Query: 494 ----KRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFT 549
               +RG+G P+T A +I T+  RGYV    ++  +   G  V E ++    ++     T
Sbjct: 599 QAMKERGLGTPATRAQVIETLVARGYVAKQGKKLVATDRGMQVAETVTTLLPDVASPELT 658

Query: 550 ADMEENLDDVAQG 562
              E+ L D+  G
Sbjct: 659 GQWEKRLKDIEAG 671



 Score = 64.7 bits (156), Expect = 2e-14
 Identities = 67/261 (25%), Positives = 114/261 (43%), Gaps = 48/261 (18%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQ-----------YVVKSSIGHIRDLPTSGSASASKEP 49
           M K+L+I E P+ A+ I   +G Q           ++V  ++GH+      G A   ++ 
Sbjct: 1   MSKTLIIAEKPSVAREIAPLVGAQGRRAGYLEGPDHLVSWAVGHL-----VGIAEPEEQD 55

Query: 50  AAKRGK-AAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKD 108
            A  G+    + P L P+ + R                    +LP        L+RL  D
Sbjct: 56  EAWAGRWTLEQLPMLPPRFQLR--------------------VLPETADQFSVLQRLLLD 95

Query: 109 --ADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQ--PGELD 164
                I  ATD  REGE I   +   + G D   +R+  +++T++ ++++ ++  P E  
Sbjct: 96  DRVTGIVNATDAGREGELIFRRIY-LVAGCDKPVRRLWASDMTEEGLRKSLARLLPDEEK 154

Query: 165 IDRVNAQQARRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEE 224
            +   A  AR   D +VG   S L   K    +S GRVQ+  + L+ +R R+I  F P++
Sbjct: 155 RNLGLAAFARAEADWLVGMNFSRLFTVKSGGLVSVGRVQTPVLCLLADRRRDIEHFTPQD 214

Query: 225 YWEIHA------DLGTAKNAK 239
           +W + A      D GT+   +
Sbjct: 215 FWTVEATFDKNLDAGTSTGTR 235