Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 900 a.a., DNA topoisomerase I (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  464 bits (1193), Expect = e-134
 Identities = 292/740 (39%), Positives = 411/740 (55%), Gaps = 124/740 (16%)

Query: 5   LVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEAPALS 64
           +V+VESPAKAKTINKYLG+ + V +S GH+RDLP                          
Sbjct: 3   VVVVESPAKAKTINKYLGSDFTVLASYGHVRDLP-------------------------- 36

Query: 65  PKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDREGEA 124
           PK+ +         VDP+HG++  +EI     K ++ +    KD DT+ LATD DREGEA
Sbjct: 37  PKDGS---------VDPEHGFEMLWEIASDSRKHVKAIADALKDDDTLILATDPDREGEA 87

Query: 125 IAWHLREAIGG-----DDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR 179
           I+WHL+EA+         T   RVVFN ITK A+ EA   P ++D++ V A  ARR LD 
Sbjct: 88  ISWHLQEALTKRKAIKKSTDVSRVVFNAITKSAVTEAMKNPRDVDMELVEAYLARRALDY 147

Query: 180 VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAK 239
           +VG+ +SP+LW K+    SAGRVQSV ++L+VERE EI AF P EYW + A L T +   
Sbjct: 148 LVGFNLSPVLWRKLPGAKSAGRVQSVCLRLIVEREMEIEAFDPREYWSVRAVLETPRGQT 207

Query: 240 VRF---EVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQ 296
                 E+A +K + F       A  A++ + +   SV   E +P +  PSAPF+TSTLQ
Sbjct: 208 YEARLTELAGKKLDKFDLATAEAAELAVQAVTSRKLSVTSVEAKPGTRNPSAPFMTSTLQ 267

Query: 297 QAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPE 356
           Q AS + GFG ++TM  AQRLYEAGYITYMRTD  +++ +A+ MAR  I+  FG  YLP+
Sbjct: 268 QEASRKFGFGARQTMSTAQRLYEAGYITYMRTDGIDMAPEAVTMARDAIKERFGAAYLPD 327

Query: 357 APLVYGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYL 415
           +P +Y +K + AQEAHE IRP++++  P  L   E D  +LY+LIW++ LA QM  A+  
Sbjct: 328 SPRIYKNKAKNAQEAHECIRPTEMSRAPEDLKVTEPDQRKLYDLIWKRTLASQMAAARLE 387

Query: 416 STSVTVAA--GDFELRAKGRILKFDG----YTRVLPQQSKPGEDDVLPEMVQGEALKL-- 467
            T+V + +  G   LRA G+++ FDG    YT    ++S   ++  LP++ QG+   L  
Sbjct: 388 RTTVEIGSPDGQVALRATGQVVVFDGFMKVYTEGQDEESTAEDERRLPQIGQGDPAPLHK 447

Query: 468 -----------------IQIDPS--------------------QHFTKPPARFTEASLVK 490
                            ++  P+                    QHFT+PP R+TEA+LVK
Sbjct: 448 GGMEAAFAKAGSREDDVVEAAPTGGMQQGPGGLLSENGAVFGQQHFTQPPPRYTEATLVK 507

Query: 491 EMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTA 550
            ME+ GIGRPSTYA+I++TIQDRGYVT    R   E  G +VT  L   F   + Y FTA
Sbjct: 508 RMEELGIGRPSTYASIVTTIQDRGYVTKDKNRLIPEDKGRLVTAFLVNYFRKYVGYDFTA 567

Query: 551 DMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESSEDGM-----RANQPTMTNI-PCK 604
           D+E  LD+V+ G+R++K+VLD F+ DFS  +  AE+SE  +     + N+    ++ P +
Sbjct: 568 DLENQLDEVSAGDRNYKDVLDRFWRDFSAAI--AETSELRITEVLEKINEVLAPHLFPPR 625

Query: 605 ECGRP-----------MMIRTA-STGVFLGCSGYSLPPKERCKAT----------VNLVP 642
           E G+P           + +RTA S G F+GCS Y       C+ T           + +P
Sbjct: 626 EDGKPPRLCPNCEIGQLSMRTARSGGAFIGCSNY-----PECRYTRPFGPPGMEEASGIP 680

Query: 643 GDEIAADDEGESESRVLLGK 662
            +     ++G  E RV  G+
Sbjct: 681 PEGKLLGEDGGDEIRVFKGR 700