Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 782 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  413 bits (1062), Expect = e-119
 Identities = 255/658 (38%), Positives = 370/658 (56%), Gaps = 85/658 (12%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           M K+LVIVESPAKAKTI K+LG  + V SS GHIRDL                       
Sbjct: 1   MQKNLVIVESPAKAKTIEKFLGKDFKVLSSYGHIRDL----------------------- 37

Query: 61  PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR 120
                K+K          +D D  +K  YEI   K+ ++  L+  AK+A+T++LA+D DR
Sbjct: 38  -----KKK-------EFSIDVDKNFKPDYEIPADKKALVSTLKAEAKEAETVWLASDEDR 85

Query: 121 EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV 180
           EGEAIAWHL E +       KR+VF+EITK AI +A  QP  +D++ VNAQQARR LDR+
Sbjct: 86  EGEAIAWHLYEVLKLKPENTKRIVFHEITKGAILKAIEQPRNIDLNLVNAQQARRILDRI 145

Query: 181 VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV 240
           VG+ +SP+LW K+   LSAGRVQSVAV+L+VEREREI AF  E  + + A          
Sbjct: 146 VGFELSPVLWRKVKPSLSAGRVQSVAVRLIVEREREIHAFKSEAAYRVIAIFLVPDTDGK 205

Query: 241 RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS 300
             E+  E     K   EA+A   L+  K +++++     RP    P APF TSTLQQ A+
Sbjct: 206 LVEMKAELSRRIKTKEEAKAF--LDACKGATFTIEDITTRPVKKTPPAPFTTSTLQQEAA 263

Query: 301 NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV 360
            +LG+ V +TMM+AQRLYE+G+ITYMRTDS NLS  A   ++  I +  G++Y+   P  
Sbjct: 264 RKLGYTVAQTMMIAQRLYESGFITYMRTDSVNLSEYATASSKDAIIQMMGERYV--HPRH 321

Query: 361 YGSK-EGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSV 419
           + +K +GAQEAHEAIRP+ +     + +  E+   +LY+LIW++ +A QM  A+   T+ 
Sbjct: 322 FETKTKGAQEAHEAIRPTYMENQSIEGTAQEK---KLYDLIWKRTIASQMADAELEKTTA 378

Query: 420 TVA---AGDFELRAKGRILKFDGYTRVL-----PQQSKPGEDDVLPEMVQGEALKLIQID 471
           T++   +GD    A G ++KFDG+ RV       +  +  E  +LP + +G+ L+   I 
Sbjct: 379 TISISKSGD-AFTAIGEVIKFDGFLRVYRESYDDENEQEDESRLLPPLKKGQKLEYGPIV 437

Query: 472 PSQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNR---------- 521
            ++ FT+ P R+TEASLV+++E+ GIGRPSTYA  ISTIQ R YV   N+          
Sbjct: 438 ATERFTQRPPRYTEASLVRKLEELGIGRPSTYAPTISTIQQREYVEKGNKDGEERTFNVL 497

Query: 522 ---------------------RFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVA 560
                                + +    G +V + L+E F +++DY FTA +E+  D++A
Sbjct: 498 TLKDNQIKDESHNEVTGAEKSKLFPTDTGTVVNDFLTEYFPDILDYNFTASVEKEFDEIA 557

Query: 561 QGERDWKNVLDEFYGDFSKKLQTAESSEDGMRANQPTMTNIPCKECGRPMMIRTASTG 618
           +GE  W +++  FY  F   ++   S +   +  +  +   P  E G+P+ ++    G
Sbjct: 558 EGEVKWTSIMKTFYDQFHPAVEKTLSIKTEHKVGERMLGEEP--ETGKPVSVKIGRFG 613