Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 586 a.a., DNA topoisomerase I (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 91.3 bits (225), Expect = 2e-22
 Identities = 122/489 (24%), Positives = 201/489 (41%), Gaps = 44/489 (8%)

Query: 97  KVIEELRRLAKDADTIYLATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEA 156
           KVIE   ++    ++I  ATD  REGE +  +L   +    + Y+R+  + +T +A+ E 
Sbjct: 93  KVIE---KVFDACESIIAATDASREGEMVFRYLYRYLECRKS-YRRLWISSLTDEAVLEG 148

Query: 157 FS--QPGELDIDRVNAQQARRFLDRVVGYMVSPLLWAKIARGL-SAGRVQSVAVKLVVER 213
               +PG L      A  +R   D V+G   S  L      G  S GRVQ+  +  +  R
Sbjct: 149 MDNLRPGSLYDHMFLAADSRNKADWVLGLNASYALCQATGTGNNSLGRVQTPILAAISSR 208

Query: 214 EREIRAFIPEEYWEIHADLGTAKN---AKVRFEVAREKGEAFKPLNEAQAMAALEKLKAS 270
            RE    I  + + +   L   KN    K+R        EA   L     +A   ++ A 
Sbjct: 209 YRERENHIATDTFPVFISL--CKNNTLLKMRCTEEFTDREAAARLYSDCKLAGHARVTAV 266

Query: 271 SYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDS 330
           S  V + E       P A +  + LQ+ A+N  G    K++ +AQ+LYE   I+Y RT  
Sbjct: 267 SRQVREIE-------PPALYNLTELQKDANNYYGMTAGKSLEIAQKLYEKKLISYPRTAG 319

Query: 331 TNLSADALDMARSYIEREFGKQYLPEAPLVYGSK----------EGAQEAHEAIRPSDVN 380
             L  D  D     +E+   ++         G            EG    H AI  +D  
Sbjct: 320 RFLPRDVYDKLPRIMEKILNRKEFRPYVRSMGINIFDLPDKVVDEGQAAEHHAIIITD-- 377

Query: 381 THPTKLSGMERDAERLYELIWRQFLACQMP--PAQYLSTSVTVAAGDFELRAKGRILKFD 438
           T+P    G+ R+  +LY +I  + L   MP   A+Y +     AA +F   A   I K  
Sbjct: 378 TYP---EGLNREEMQLYMMIIGRMLEAFMPVCRAEYTTVDAVCAARNFRCHACRIIEK-- 432

Query: 439 GYTRVLPQQSK-PGED---DVLPEMVQGEALKLIQIDPSQHFTKPPARFTEASLVKEMEK 494
           G+  +  ++S   G +     +P++  GE   +             + +T+A L+  M+ 
Sbjct: 433 GWFGIFERESVIAGREYGFSPIPQLENGETAAVTGCSLIHRKDLTVSAYTDAELITYMDT 492

Query: 495 RGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEE 554
            G+G  +T   I+ T+ DR YV    +     + G  + E +      + +   T+  E 
Sbjct: 493 AGLGTAATRTGILQTLIDRKYVRYSGKYIIPTRKGLYIYETVRN--MKIAETALTSGWEA 550

Query: 555 NLDDVAQGE 563
            L  + +G+
Sbjct: 551 QLARMERGK 559