Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 720 a.a., DNA topoisomerase III (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  139 bits (351), Expect = 5e-37
 Identities = 141/533 (26%), Positives = 244/533 (45%), Gaps = 65/533 (12%)

Query: 93  PGKEKVIEELRRLAKDADTIYLATDLDREGEAIA-WHLREAIGGDDTRYKRVVFNEITKK 151
           P  EK    +  L ++AD I    D  +EGE I  W +++A  G     KR+  + +T++
Sbjct: 79  PTYEKQFHIIEGLMQNADEIINCGDAGQEGELIQRWVMQKA--GARCPVKRLWISSLTEE 136

Query: 152 AIQEAFSQ-PGELDIDRV-NAQQARRFLDRVVGYMVSPLLWAKIARG---LSAGRVQSVA 206
           AI+E F++   + D   +  A  +R   D ++G   + L   K  +    LS GRVQ+  
Sbjct: 137 AIREGFAKLKDQSDFQSLYEAGLSRAMGDWLLGMNATRLYTIKYGQNKQVLSIGRVQTPT 196

Query: 207 VKLVVEREREIRAFIPEEYWEIHADL-GTAKNAKVR---FEVAREKGEA----------F 252
           + L+V R+ EI  F P++YWE+  +   T  +A +R    E+A E+ ++           
Sbjct: 197 LALIVNRQLEIANFQPKQYWELKTNYRDTTFSALIRKSDEEIAAEEEKSGGKKKIDNPGI 256

Query: 253 KPL-NEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTM 311
            P+ N  +  A +E++K   + V     +         F  ++LQ   + +  +   +T+
Sbjct: 257 DPIANREEGEALVERIKDLPFIVTNVGKKDGKEYAPRLFDLTSLQVECNKKFAYSADETL 316

Query: 312 MMAQRLYEAGYITYMRTDSTNLSAD-------ALDMARSY--IEREFGKQYLPEAPLVYG 362
            + Q LYE    TY R D+T LS D        L   R Y  +        LP++  V+ 
Sbjct: 317 KLIQSLYEKKVATYPRVDTTFLSDDIYPKCPGILKGLRDYEVLTAPLSGASLPKSKKVFD 376

Query: 363 SKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVTVA 422
           + +     H AI P+ V  +   L+ MER   R+Y+LI R+F+A   P  +  +T+V   
Sbjct: 377 NSKVTD--HHAIIPTGV--YAQNLTDMER---RVYDLIARRFIAVFYPDCKISTTTVMGE 429

Query: 423 AGDFELRAKGRILKFDGYTRVL-------PQQSKPGEDDVLPEMVQGEALKLIQIDPSQH 475
               E +  G+ +   G+  V         ++ +  +++VLP  V+GE+   +  D ++ 
Sbjct: 430 VDKIEFKVIGKQILEPGWRVVFAKDVKDTSEEKEEEDENVLPAFVKGESGPHVP-DLNEK 488

Query: 476 FTKPPARFTEASLVKEME----------------KRGIGRPSTYAAIISTIQDRGYVTLH 519
           +T+PP  +TEA+L++ ME                + GIGRPST AAII T+  R Y+   
Sbjct: 489 WTQPPRPYTEATLLRAMETAGKLVDNDELRDALKENGIGRPSTRAAIIETLFKRNYIRKE 548

Query: 520 NRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDE 572
            +   +   G  + + + E    L     T   E+ L ++ +   D +  L+E
Sbjct: 549 RKNLIATPTGVELVQIIHEEL--LKSAELTGIWEKKLREIEKKTYDARQFLEE 599