Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 693 a.a., DNA topoisomerase I (Omega-protein) (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  150 bits (380), Expect = 2e-40
 Identities = 157/595 (26%), Positives = 257/595 (43%), Gaps = 66/595 (11%)

Query: 6   VIVESPAKAKTINKYLG-----------NQYVVKSSIGHIRDLPTSGSASASKEPAAKRG 54
           VI E P+ A+ I + LG           N Y+V  + GH+  L       A  E    + 
Sbjct: 4   VIGEKPSVARDIARILGASEKQDGYLSGNGYLVTWAFGHLVGL-------AMPEAYGIQS 56

Query: 55  KAAGEAPALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYL 114
                 P +        QL  R  V  + G+KA     PG  K ++ ++ +   +D I +
Sbjct: 57  FRRESLPIIPDSF----QLTPRQ-VKAEKGYKAD----PGALKQLKVIKDVFDQSDKIIV 107

Query: 115 ATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFS--QPGELDIDRVNAQQ 172
           ATD  REGE I  ++   IG +   + R+  + +T K+I+E     + G L  +   + Q
Sbjct: 108 ATDAGREGELIFRYIYNYIGCNKP-FVRLWISSLTDKSIREGLQNLKAGSLYDNLFLSAQ 166

Query: 173 ARRFLDRVVGYMVSPLLWAKIARGL-SAGRVQSVAVKLVVEREREIRAFIPEEYWEIHAD 231
           AR   D ++G   +  L     +G+ S GRVQS  + ++  R  E + F+P++YW++   
Sbjct: 167 ARSEADYLIGINGTQALSVAAGQGIFSLGRVQSPTLAMICTRFLENKNFVPQKYWQLK-- 224

Query: 232 LGTAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRP-TSSKPSAPF 290
           L  AK+      ++ +K +  +P     A+  L+++K +    VK  +R   + +P   +
Sbjct: 225 LQAAKDNVSFAALSTDKCDKQQP-----AIDTLQRIKEAETVQVKTVERKEVNQEPPLLY 279

Query: 291 ITSTLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFG 350
             +TLQ+ A+ +L F   KT+ +AQ+LYE   I+Y RT S  +S D  +     +     
Sbjct: 280 DLTTLQKEANTKLNFSADKTLSIAQKLYEGKLISYPRTGSRYISQDVFEEIPERLVNL-- 337

Query: 351 KQYLPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKL------SGMERDAERLYELIWRQF 404
           +QY        G K  A  +  ++    V  H   +        ME D + +YELI  + 
Sbjct: 338 EQYTRFGGYAAGMKGKALNS-RSVNDGKVTDHHALIVTENLPDKMEADEQAIYELIAGRM 396

Query: 405 LACQMPPAQYLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEA 464
           L           TSVT+         KG ++K  G+  V  ++    ++  LP M  G++
Sbjct: 397 LEAFSEKCVKDVTSVTLECAGSLFTVKGSVIKSAGWRAVFGEKEDGEDNAALPAMQDGDS 456

Query: 465 LKLIQIDPSQHFTKPPARFTEASLVKEME----------------KRGIGRPSTYAAIIS 508
           L L  I+  +  TKP    TE+SL+  ME                  GIG P+T AAII 
Sbjct: 457 LPLSGIELLEKQTKPKPLHTESSLLSSMETAGKELENADLKASMKDTGIGTPATRAAIIE 516

Query: 509 TIQDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGE 563
           T+  R Y+    +     + G  V   + +    + D   T   E  L  +  GE
Sbjct: 517 TLFSRQYIVREKKNLVPTEKGLTVYNIIRD--KKIADVEMTGMWENTLAKIESGE 569