Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 894 a.a., DNA topoisomerase I (RefSeq) from Shewanella sp. ANA-3

 Score = 1185 bits (3065), Expect = 0.0
 Identities = 583/876 (66%), Positives = 699/876 (79%), Gaps = 16/876 (1%)

Query: 1   MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA 60
           MGKSLVIVESPAKAKTINKYLG +++VKSS+GHIRDLPTS S+  +++      K+A E 
Sbjct: 17  MGKSLVIVESPAKAKTINKYLGKEFIVKSSVGHIRDLPTSSSSDGNEKV-----KSAAEV 71

Query: 61  PALSPKEKAR-------RQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIY 113
             +SP+EKAR       + LV+RMGV+P+ GW AKY+ILPGKEKV++EL+ LA  AD IY
Sbjct: 72  KKMSPEEKARYKKVKEHQALVSRMGVNPEKGWAAKYQILPGKEKVVKELQALADSADQIY 131

Query: 114 LATDLDREGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQA 173
           LATDLDREGEAIAWHL+E IGGD +RY+RVVFNEITK AIQEAFS+P  LD + VNAQQA
Sbjct: 132 LATDLDREGEAIAWHLQEVIGGDPSRYQRVVFNEITKSAIQEAFSKPSSLDTNMVNAQQA 191

Query: 174 RRFLDRVVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLG 233
           RRFLDRVVG+MVSPLLW K+ARGLSAGRVQSVAV+LVVERE EI+AF+PEE+W++HA L 
Sbjct: 192 RRFLDRVVGFMVSPLLWKKVARGLSAGRVQSVAVRLVVERESEIKAFVPEEFWDVHAQLN 251

Query: 234 TAKNAKVRFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITS 293
           T  +  +R EV +    AF+P NE QA+AA++ L ++S+ V+ RED+ T SKPSAPFITS
Sbjct: 252 TPASEALRMEVVKYLDSAFEPTNEQQALAAVQALSSASFKVIAREDKATQSKPSAPFITS 311

Query: 294 TLQQAASNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQY 353
           TLQQAAS RLGFGVKKTMMMAQRLYEAG+ITYMRTDSTNLS +ALD  R  I +E+G +Y
Sbjct: 312 TLQQAASTRLGFGVKKTMMMAQRLYEAGHITYMRTDSTNLSQEALDSVREMIGKEYGAKY 371

Query: 354 LPEAPLVYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQ 413
           LP  P+ YGSKEGAQEAHEAIRPS+V      L+ MERDA+RLYELIWRQF++CQM PAQ
Sbjct: 372 LPAEPIRYGSKEGAQEAHEAIRPSNVKVEAAALTDMERDAQRLYELIWRQFVSCQMTPAQ 431

Query: 414 YLSTSVTVAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDD-VLPEMVQGEALKLIQIDP 472
           Y +T +TV AGD+EL+A GRIL+FDG+TRV     K  E+D  LP + +G+ L L++++P
Sbjct: 432 YDATKLTVKAGDYELKATGRILRFDGWTRVQTALKKKNEEDNTLPSVNEGDLLSLVELEP 491

Query: 473 SQHFTKPPARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIV 532
            QHFTKPPAR++EASLVKE+EKRGIGRPSTYA IISTIQ+RGYV + NRRFY+EKMG+IV
Sbjct: 492 KQHFTKPPARYSEASLVKELEKRGIGRPSTYATIISTIQERGYVKVENRRFYAEKMGEIV 551

Query: 533 TERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAE--SSEDG 590
           +ERL  SF+ LM Y FTA ME+ LDDVA GE DWK VLD FY DF+K+L+ AE    E G
Sbjct: 552 SERLVGSFAELMSYDFTASMEQTLDDVASGELDWKKVLDGFYADFTKQLEKAELAPEEGG 611

Query: 591 MRANQPTMTNIPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADD 650
           MR NQ  MTNI C  CGRPM IRT +TGVFLGCSGY LPPKERCK T+NL PG E  +D 
Sbjct: 612 MRLNQMVMTNIKCPTCGRPMGIRTGTTGVFLGCSGYELPPKERCKTTMNLTPGIEAISDS 671

Query: 651 EGESESRVLLGKHRCPICATAMDAYLLDEKHKLHICGNNPDCVGYEIEEGNYRIKGYEGP 710
           E ++E+  L  KHRC IC TAMD+YL+DEK KLH+CGNNP C GYE+EEG ++IKGYEGP
Sbjct: 672 E-DAETDALRAKHRCGICGTAMDSYLIDEKRKLHVCGNNPICEGYEVEEGQFKIKGYEGP 730

Query: 711 SLECDKCGSEMQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVD 770
            +ECD+CG +M+LK GRFGK+FGCTN  CKNTRKLLK+GEAAPPK D + +PELKC K D
Sbjct: 731 LIECDRCGHDMELKNGRFGKYFGCTNEECKNTRKLLKNGEAAPPKEDPIYLPELKCSKSD 790

Query: 771 DTYVLRDGASGLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPDGRPA 830
             +VLRDGA+G+FLAAS FPK+RETRAPLV E+V ++  + PKY +L DAP  D +G  A
Sbjct: 791 AHFVLRDGAAGIFLAASTFPKSRETRAPLVEELVKYRELLWPKYQYLADAPIADDEGNKA 850

Query: 831 VIRYSRKTKEQYVQSEVDGKPTGWKAFYDGNAWKVE 866
            +++SRKTKEQYV +EVDGK TGW A Y    W  E
Sbjct: 851 AVKFSRKTKEQYVATEVDGKATGWSAHYVNGKWVTE 886