Pairwise Alignments

Query, 869 a.a., DNA topoisomerase I from Pseudomonas putida KT2440

Subject, 704 a.a., DNA topoisomerase III (RefSeq) from Shewanella sp. ANA-3

 Score =  106 bits (264), Expect = 5e-27
 Identities = 133/554 (24%), Positives = 226/554 (40%), Gaps = 86/554 (15%)

Query: 102 LRRLAKDADTIYLATDLDREGEAIAWHLREAIG--GDDTRY-KRVVFNEITKKAIQEAFS 158
           L++L K ADT+  A D DREG+ +   +   +G  GD  +  +R++ +++  +A++ A S
Sbjct: 88  LKKLVKQADTLVNAGDPDREGQLLVDEVIAYLGVTGDKLQQTQRLLISDLNPQAVKRALS 147

Query: 159 Q--PGELDIDRVNAQQARRFLDRVVGYMVS---PLLWAKIARG--LSAGRVQSVAVKLVV 211
           Q       I    +  AR   D + G  ++    +   K+     LS GRVQ+  + L+V
Sbjct: 148 QLRSNREFIPLSTSALARSRADWLYGMNMTRAYTIQGKKVGYQGVLSVGRVQTPLLGLIV 207

Query: 212 EREREIRAFIPEEYWEIHADLGTAKNAKVRFEVAREKGEAFKP--------LNEAQAMAA 263
            R+ EI  F  + ++E+ A L T K+    F    +  EA  P        L +  A   
Sbjct: 208 RRDEEIANFQSKPFYEVLAHLVTDKDQ--TFTAKWQPSEACLPYMDEEGRVLAKGLAQNV 265

Query: 264 LEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAASNRLGFGVKKTMMMAQRLYEA-GY 322
           + ++      V +   +     P  P+  S LQ  A+ R G   K  +   Q LYE    
Sbjct: 266 VRRITDKPAKVTQLSTKDKQQNPPLPYSLSALQIDAAKRFGMSAKDVLDTCQSLYERHKL 325

Query: 323 ITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLVYGSKEGAQ-------------E 369
           ITY R+DS  L  +   +A   +    G      AP +    E                +
Sbjct: 326 ITYPRSDSRYLPTEQHALASGVLAAIMG-----GAPELVAHAEAPNPRLKSKAWDDKKVD 380

Query: 370 AHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTS--VTVAAGDFE 427
           AH AI P++   +   L+G+ +   +LY  I RQ+LA   P   Y  T+  VT+  G F+
Sbjct: 381 AHHAIIPTEKQPN---LAGLSQRERQLYLHIARQYLAQFYPAYCYSETAVEVTIEGGLFK 437

Query: 428 LRAKGRILKFDGYTRVLPQQSKPGED--------------------DVLPEMVQGEALKL 467
            +AK    K  G+ ++  ++    +D                      LP +  G+ L  
Sbjct: 438 TKAKQD--KSLGWKQLFAREENERKDASSAASFAQGDKDAEEGEYVGQLPPLTLGQVLHC 495

Query: 468 IQIDPSQHFTKPPARFTEASLVKEM-----------------EKRGIGRPSTYAAIISTI 510
            Q +  +  T+PP  FT+A+L+  M                 E  G+G  +T A II  +
Sbjct: 496 HQGELVEKQTQPPKAFTDATLLSAMTGINRYVTDPEIRKILKETDGLGTEATRAGIIELL 555

Query: 511 QDRGYVTLHNRRFYSEKMGDIVTERLSESFSNLMDYGFTADMEENLDDVAQGERDWKNVL 570
             RG++    +   + ++G  +   L  S +       TA  E +L+ +   E  +   +
Sbjct: 556 FKRGFIQRQGKSIVATEIGKGLINSLPISATT---PDMTALWEASLNGICHKEISYHGFM 612

Query: 571 DEFYGDFSKKLQTA 584
               G  +  ++ A
Sbjct: 613 QPLLGTLNNLIENA 626