Pairwise Alignments

Query, 321 a.a., transposase from Pseudomonas putida KT2440

Subject, 319 a.a., IS110 family transposase from Rhodopseudomonas palustris CGA009

 Score = 83.6 bits (205), Expect = 6e-21
 Identities = 82/308 (26%), Positives = 144/308 (46%), Gaps = 17/308 (5%)

Query: 6   IPIEAGVDTSKDELVIQAAPNTKSFAIPNTPKAIKAWLKTLPKGSA--LAIEATSTYHME 63
           + + AGVD  +  L +  AP+ ++F +PN  + I   +  L +     + +EA   Y   
Sbjct: 7   LAVAAGVDAGQRFLDVALAPSGQTFRMPNLAEGIAEIIARLERSGVRRVVLEAIGPYAEP 66

Query: 64  MAEQAHAAGFAVYVIDGLRLSKYRESVAIRAKTDAHDAALLARFLSNERGSLKAWTPPPA 123
           + +    AGF V +++  R+  +RE+   RAKTD  DA L+ARF      +L+    P  
Sbjct: 67  LVKALSVAGFEVGIVNPRRIKAFREAEGSRAKTDRLDARLIARFALTMPETLRPL--PTD 124

Query: 124 GHREIQVL-LRRR--AKLVAVRGMLRMSLSGDKLFASELKRVEEVLERIELSLEKQLRAV 180
              E++ L LRRR   +++A+       + G  L  S    +  +  + + ++E +L   
Sbjct: 125 TQLELKALSLRRRQLTEMIAMEKTRMKQVRGTLLLDSHRAAIAALSAQCQ-AIEAEL--- 180

Query: 181 IKKAGLSDQMRRV----QRLPGVGFLTAAGLVMSFMRGEFKNSDAFVAYLGMDVTVSQSG 236
            K+ G   ++RRV    + +PG+G   A  L+        ++  A  +  G+   VSQSG
Sbjct: 181 AKRIGDDAELRRVLHILKSIPGIGERVATLLITDLPELGQRDRKAIASLAGLAPHVSQSG 240

Query: 237 KWAGRGKLSKRGDSEVRRLLYNASMSGSR-TATWKQYYAHHQARGKKTTQALVILARRLA 295
               R  ++  G   VR  LY A++  +R     +  Y   + +GK    AL+ +AR+L 
Sbjct: 241 AAPPRAAIA-GGRPCVRAALYMAALVAARHHPKLRDDYNALRLQGKPGKVALIAIARKLL 299

Query: 296 RLAFGLMR 303
             A  L++
Sbjct: 300 VTANALVK 307