Pairwise Alignments

Query, 219 a.a., DNA-binding response regulator, LuxR family from Pseudomonas putida KT2440

Subject, 209 a.a., Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain from Pseudomonas stutzeri RCH2

 Score =  149 bits (375), Expect = 5e-41
 Identities = 81/213 (38%), Positives = 128/213 (60%), Gaps = 7/213 (3%)

Query: 4   RLLLVDDHSLIRAGVRALVCDIPGYDVVGEADDGNQLLDQVRTLAPDIILLDISMRSTSG 63
           R+++ +DH+++R G++ L+       VVGEA  G QLLDQ+R ++ D++LLDISM   +G
Sbjct: 3   RVMVAEDHTIVREGIKQLIGMARDMQVVGEAASGQQLLDQLRQISCDVVLLDISMPGVNG 62

Query: 64  LDALTQLRASGSTCKVLILSMHTDPDLIMRALESGAHGYLLKDTSATELEQALGAVRHGE 123
           L+A+ ++RA      VL+LSMH +  +  RAL+ GA GY  KD+    L  AL  V  G 
Sbjct: 63  LEAIPRIRALNQPPAVLVLSMHDEAQMAARALKIGAAGYATKDSEPALLLTALRKVAGGG 122

Query: 124 RYLSPAIAHTVINQALRHTKQGKPSAGERHNLTS-RQLEILRLIVRGKSTREIAAGLGLS 182
           RY+ PA+A  ++ +       G   +   H L S R+  +   +V+G S  +IA  L LS
Sbjct: 123 RYIDPALADRMVFEV------GLTDSRPPHALLSEREYSVFERLVQGDSVNDIAGKLALS 176

Query: 183 IKTVETHRSQIMKRLQIHDVAGLVLFAVREKII 215
            KT+ TH++++M++L  H VA LV +A+  K++
Sbjct: 177 SKTISTHKARLMQKLAAHSVADLVRYAMEHKLV 209