Pairwise Alignments

Query, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

Subject, 526 a.a., PAS domain S-box from Pseudomonas stutzeri RCH2

 Score =  381 bits (979), Expect = e-110
 Identities = 218/522 (41%), Positives = 310/522 (59%), Gaps = 5/522 (0%)

Query: 1   MRNNQPITQRERTFPAQQRLISTTNAKGVITYCNDAFIEISGFTREELTGAPHNLVRHPD 60
           MR N P++ RE        ++STT+ KG ITY N  F+ ISGF+ +EL G PHN+VRHPD
Sbjct: 1   MRLNLPVSGREVVVGDTANILSTTDLKGTITYANPDFVAISGFSEDELLGQPHNIVRHPD 60

Query: 61  VPPAVFAHMWQTLKQGQPWMGIVKNRCKSGDHYWVNAYVTPIFDNNQVVGFESVRVKPTA 120
           +P A FA +WQTL+  + WMG+VKNRCK+GDHYWV+A+ TP+  N +V  ++SVR +P  
Sbjct: 61  MPEAAFADLWQTLQANRSWMGMVKNRCKNGDHYWVSAFATPVSRNGKVKEYQSVRTRPQP 120

Query: 121 EQIRRAEALYQRINQGKPPVPRRDKWLPVLQDWLPFILISQV--GFLIGNWLGHSWGFAL 178
           EQIR AEALY ++  G+     R      L++ L  +  +    G ++G  L  S   A 
Sbjct: 121 EQIRAAEALYAQLRDGRGAPTLRSS--VGLRERLALLAAAGAAGGVVVGTVLAASPIAAT 178

Query: 179 AAGLSVP-LGLLGLSWQQRGLKRLLRLAEQTTSDPLIAQMFTDSRGVQARLEMAMLSQDA 237
            AGL++     +  +     L RL R A Q   +P+   ++T  R    ++E AM   + 
Sbjct: 179 LAGLALGGAAAVAAATALLPLSRLARQARQVGDNPVSQLIYTGRRDEIGQIEFAMKMLET 238

Query: 238 RMKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAAAVNQMAATTQEVAN 297
                + R+ DS+  LSD AR      H S+    RQ+ ET+ +A A+ QM+A+ QEVA 
Sbjct: 239 EAGAMVGRIADSSRQLSDHARDLLGAMHGSTQSAARQQQETDLIATAIQQMSASVQEVAL 298

Query: 298 HVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQLAKDSDEIGGVVDV 357
           + QRTA+    A+   ++GR++ G T  +I RL+A + +  + + QL   S EI  V+DV
Sbjct: 299 NAQRTAEVAARADSEAAKGREVVGRTGSSITRLAADIQQAAEVIHQLENHSQEISRVLDV 358

Query: 358 IKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAESTGQIHGLIAKLQQT 417
           I GIA+QTNLLALNAAIEAARAGE GRGFAVVADEVRQLA RT+ +T  I  +I  LQ  
Sbjct: 359 IHGIAEQTNLLALNAAIEAARAGEQGRGFAVVADEVRQLASRTSLATTDIQRMIGSLQTG 418

Query: 418 ASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQIAAATEEQTAVADEI 477
           A  AV  M+    QA+  V    QA+ +L GI+  V  I+ M++QIAAA ++Q++V +EI
Sbjct: 419 AREAVDVMQRSREQAEHSVSHADQAEHSLSGINSRVNEISAMSSQIAAAVDQQSSVGEEI 478

Query: 478 SRNISTIAELADQTAEQAQHSALLSEELTSTAGSQYSLVERF 519
           S++I +I   +D+      HS   +  +   A     LV++F
Sbjct: 479 SQSIVSIRGSSDEHVASGLHSQRNATGVALLADGMLELVQQF 520