Pairwise Alignments

Query, 521 a.a., putative aerotaxis receptor from Pseudomonas putida KT2440

Subject, 542 a.a., PAS domain S-box from Dechlorosoma suillum PS

 Score =  333 bits (854), Expect = 9e-96
 Identities = 196/536 (36%), Positives = 303/536 (56%), Gaps = 17/536 (3%)

Query: 1   MRNNQPITQRERTFPAQQRLISTTNAKGVITYCNDAFIEISGFTREELTGAPHNLVRHPD 60
           M+NN P+TQ E  F   + ++S T+ KG+ITY ND F+E+SGFTR+EL G  HNLVRHPD
Sbjct: 1   MKNNLPVTQVEVPFIKGKYIVSKTDLKGIITYANDTFVELSGFTRDELIGKNHNLVRHPD 60

Query: 61  VPPAVFAHMWQTLKQGQPWMGIVKNRCKSGDHYWVNAYVTPIFDNNQVVGFESVRVKPTA 120
           +PPA FA +W ++K+G+PW GIVKNRCK+GDHYWV+A V P+    Q +G+ SVR +P+ 
Sbjct: 61  MPPAAFADLWISVKEGRPWRGIVKNRCKNGDHYWVDALVVPVRQKGQTIGYMSVRTEPSR 120

Query: 121 EQIRRAEALYQRINQGKPPVPRRDKWLPV-----LQDWLPFILISQVGFLIGNWLGHSWG 175
            Q++ AEALY ++ +G   +PR   W  V     +     F++ +Q+   IG W G   G
Sbjct: 121 AQVQSAEALYAKLGKGGGAIPRPGGWRKVSLRKKMAGLTLFVMAAQLLTGIGVWFGSGIG 180

Query: 176 FAL--AAGLSVPLGLLGL--SWQQRGLKR-LLRLAEQTTSD-------PLIAQMFTDSRG 223
           F+      L   L L GL     Q GL++ + R  + T S         L   ++ D   
Sbjct: 181 FSADSIVALVQILSLTGLVAGAVQIGLQQGIFRAIDATNSSLDRVAQGDLSEDLWHDRLD 240

Query: 224 VQARLEMAMLSQDARMKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQVAA 283
              +L+ ++L+  A +K  L  + ++A  +S    Q +      S+  E Q     ++AA
Sbjct: 241 EVGKLQDSLLTTQAHLKVMLAEIAEAANRVSGNTTQLNLEMSSVSSQSESQSDSVSRIAA 300

Query: 284 AVNQMAATTQEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSAAVGETGQTVTQ 343
           ++ +M+AT ++V+   Q TA A        +   Q   + REA   + +AV     T+  
Sbjct: 301 SMEEMSATVEQVSADAQETASAVGTTRERIAGVEQRMIQGREASRAVVSAVDTASNTMAT 360

Query: 344 LAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEVRQLAQRTAES 403
           L +  + IG V   I+ IADQTNL+ALNAAIEAARAGE GRGFAVVADEVR+LA+RT   
Sbjct: 361 LFQSLNRIGVVTQGIQEIADQTNLIALNAAIEAARAGEAGRGFAVVADEVRKLAERTRLQ 420

Query: 404 TGQIHGLIAKLQQTASNAVLTMETGHRQAQEGVDRVMQADEALVGISEAVANITDMATQI 463
           T +I  ++ ++Q+   +AV ++E+   Q     + + +   +L  + +   +I +MA  I
Sbjct: 421 TAEIAEMVTEIQKITESAVGSIESAGAQVGHNDEAMGETGVSLAEVVQDGQHIDEMARHI 480

Query: 464 AAATEEQTAVADEISRNISTIAELADQTAEQAQHSALLSEELTSTAGSQYSLVERF 519
           A AT +Q+  + +++ ++S IA L ++ A     +    ++L +TAG   +L+  F
Sbjct: 481 AQATVQQSQASQDVAMSVSEIAALIEENAAAIGEAERNVQQLLATAGELRNLIAYF 536



 Score = 38.1 bits (87), Expect = 8e-07
 Identities = 41/202 (20%), Positives = 82/202 (40%), Gaps = 15/202 (7%)

Query: 221 SRGVQARLEMAMLSQDARMKTCLTRLQDSAEHLSDQARQSDALAHKSSTGLERQRVETEQ 280
           SR V + ++ A  +  A +   L R+    + + + A Q++ +A  ++       +E  +
Sbjct: 344 SRAVVSAVDTASNTM-ATLFQSLNRIGVVTQGIQEIADQTNLIALNAA-------IEAAR 395

Query: 281 VAAAVNQMAATTQEVANHVQRTADATQEANRLTSQGRQIAGETREAIERLSA-------A 333
              A    A    EV    +RT   T E   + ++ ++I      +IE   A       A
Sbjct: 396 AGEAGRGFAVVADEVRKLAERTRLQTAEIAEMVTEIQKITESAVGSIESAGAQVGHNDEA 455

Query: 334 VGETGQTVTQLAKDSDEIGGVVDVIKGIADQTNLLALNAAIEAARAGEMGRGFAVVADEV 393
           +GETG ++ ++ +D   I  +   I     Q +  + + A+  +    +    A    E 
Sbjct: 456 MGETGVSLAEVVQDGQHIDEMARHIAQATVQQSQASQDVAMSVSEIAALIEENAAAIGEA 515

Query: 394 RQLAQRTAESTGQIHGLIAKLQ 415
            +  Q+   + G++  LIA  Q
Sbjct: 516 ERNVQQLLATAGELRNLIAYFQ 537