Pairwise Alignments

Query, 800 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 1099 a.a., diguanylate cyclase (GGDEF domain) with PAS/PAC and GAF sensors from Synechococcus elongatus PCC 7942

 Score =  125 bits (315), Expect = 1e-32
 Identities = 68/168 (40%), Positives = 101/168 (60%), Gaps = 5/168 (2%)

Query: 633  VEEELRALSVTDSLTGIHNRRYFQERLKIELERAQRDGLPLAVIMLDIDHFKRINDRFGH 692
            + E LR  ++ D LTG+ NRRY QE  + EL RA+R G  + ++MLDID+FKR ND FGH
Sbjct: 901  LRETLRQENLRDPLTGLFNRRYLQEFFEQELARAKRSGDSIGILMLDIDYFKRFNDEFGH 960

Query: 693  AVGDRVLRSLCQRIAQRLRRTDVFCRLGGEEFMVLCPGSDANQARLLALELWQGVRNVPV 752
              GD VL+ + + +  ++R +DV CR GGEE  +L PG+    +   A ++ Q +  + +
Sbjct: 961  DAGDMVLKQVARALLNQVRASDVVCRFGGEEIAILMPGASLEVSARKADQIRQAIAQLII 1020

Query: 753  ----EGVGQVTASFGVAGW-RSGEGADALLLRADAGVYAAKQAGRDRV 795
                + +  +T S GVA +  SG  +D L+  AD  +Y AK AGR+ V
Sbjct: 1021 SYHEQTLPSLTISIGVAAFPESGLASDTLIKSADTSLYQAKAAGRNCV 1068



 Score = 50.8 bits (120), Expect = 4e-10
 Identities = 41/168 (24%), Positives = 71/168 (42%), Gaps = 3/168 (1%)

Query: 465 ADGSQLVANMLVTAMLDEQGLWVGYLAICIDVTERRRVHEALAARDRLLEKLSAEVPGGI 524
           ADGS    +    A+ + +G  V  +   ID+T+R+     LA  +     L  + PG +
Sbjct: 559 ADGSIHWVSGQGEAVRNAEGQVVRLIGSAIDITDRKATELRLAQAEEQARLLIEKNPGVV 618

Query: 525 YQYRLDANGHSCFPYASMGLYDIYEIDLMQLREDASAVFER-IHPDDLERVRRSVRYSAE 583
           Y  R   N      Y S  +  +  +D  Q     +  +++ +HPDDL+++++    +  
Sbjct: 619 Y--RFSPNALQDKGYVSPQIETLLGVDQSQWHAGFANTWQQFVHPDDLDKIQQQFEAALA 676

Query: 584 HLSPWREEYRVCLPRAGLRWVRGEATPEVGEQGCTLWHGYLTDISDLK 631
               +  EYR+        WVR +    +   G  L  G   DI+ LK
Sbjct: 677 EQRAYSFEYRMIRSDGQTIWVRDQGEMLLSVDGTLLVQGLAIDITALK 724



 Score = 31.2 bits (69), Expect = 3e-04
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 564 ERIHPDDLERVRRSVRYSAEHLSPWREEYRVCLPRAGLRWVRGEATPEVGEQGCTL-WHG 622
           ++IHP D +   R+V+   +  +P+  ++RV      + WV G+       +G  +   G
Sbjct: 526 QQIHPLDRDYWLRNVQRCIQQGTPYSIDFRVTWADGSIHWVSGQGEAVRNAEGQVVRLIG 585

Query: 623 YLTDISDLKGVEEEL 637
              DI+D K  E  L
Sbjct: 586 SAIDITDRKATELRL 600