Pairwise Alignments

Query, 800 a.a., Sensory box protein from Pseudomonas putida KT2440

Subject, 889 a.a., diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) from Synechococcus elongatus PCC 7942

 Score =  118 bits (296), Expect = 1e-30
 Identities = 72/182 (39%), Positives = 107/182 (58%), Gaps = 7/182 (3%)

Query: 617 CTLWHGYLTDISDLKGVEEELRALSVTDSLTGIHNRRYFQERLKIELERAQRDGLPLAVI 676
           C  +  +  DI+D +  E+ L   +  D LTG+ NR   QE+ +  L  A+R    LAVI
Sbjct: 442 CVGFISFGIDITDRRDNEKALERQACYDFLTGLANRFLLQEQGQELLLLAKRSQEMLAVI 501

Query: 677 MLDIDHFKRINDRFGHAVGDRVLRSLCQRIAQRLRRTDVFCRLGGEEFMVLCPGSDANQA 736
            +D+D FK IND FGH VGDRVL  + QRI Q +R++D+  RL G+EF+V+ P +DA  A
Sbjct: 502 FIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILPNTDAQGA 561

Query: 737 RLLALELWQGVRNVPVEGVG----QVTASFGVAGWR-SGEGADALLLRADAGVYAAKQAG 791
             LA +L Q +   P   +G    Q+T S G++ +   G+  + L+ +AD  +Y+ K+ G
Sbjct: 562 ATLAQKLQQQI--TPPIAIGDRSIQLTTSLGISLFPVDGDDLEILIKKADTAMYSIKEGG 619

Query: 792 RD 793
           RD
Sbjct: 620 RD 621



 Score = 36.2 bits (82), Expect = 8e-06
 Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 36/295 (12%)

Query: 318 MAVGLLGGLLSLLLSVLLYS---LFSQRQRALALVAQRTAELQVSEQSLRGTHNQLRSVL 374
           +AV LL   +SL + ++      L  QR    A++ ++T  L    ++L  T  +L    
Sbjct: 281 LAVILLMFSISLAVHIVALQYAELRRQRDHLQAIINEQTNYLIDEIEALDKTQKELEDAR 340

Query: 375 DAATQVA------IIATNLKGVVSTFNAGAERMLGYAASEAIGRLRLEDLVLPEELNLRA 428
           D A  +       ++  +L G +   N  AE + GY  SE +G+   E +V P +     
Sbjct: 341 DFAENLIQTANAIVLLLDLNGCILELNPTAEEVTGYQRSEILGKDWFESIV-PRD----- 394

Query: 429 QALSLRFGRAIAGGQAMFAETVQEHGAEPGEWTLLRADGSQLVANMLVTAMLDEQGLWVG 488
                R+       +   +E +  +   P    ++   G +    +   + + +    VG
Sbjct: 395 -----RYPHVWEQFKNCSSEEIPHNFENP----IITKSGKERYI-VWRNSKIFKNNECVG 444

Query: 489 YLAICIDVTERRRVHEALAARDRLLEKLSAEVPGGIYQYRLDANGHSCFPYA--SMGLYD 546
           +++  ID+T+RR   +AL  R    + L+    G   ++ L   G      A  S  +  
Sbjct: 445 FISFGIDITDRRDNEKAL-ERQACYDFLT----GLANRFLLQEQGQELLLLAKRSQEMLA 499

Query: 547 IYEIDLMQLRE----DASAVFERIHPDDLERVRRSVRYSAEHLSPWREEYRVCLP 597
           +  IDL + ++        V +R+  +  +R+R+SVR S        +E+ V LP
Sbjct: 500 VIFIDLDRFKDINDNFGHEVGDRVLVEVAQRIRQSVRQSDLIARLSGDEFVVILP 554